Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060656.seq
(688 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U14635-7|AAC46658.2| 521|Caenorhabditis elegans Hypothetical pr... 31 0.77
U14635-6|AAP86617.1| 517|Caenorhabditis elegans Hypothetical pr... 31 0.77
AF003739-5|AAK84629.2| 422|Caenorhabditis elegans Temporarily a... 29 3.1
AF068713-20|AAC17803.2| 309|Caenorhabditis elegans Hypothetical... 29 4.1
AC006636-2|AAF39797.1| 325|Caenorhabditis elegans Hypothetical ... 29 4.1
AL110479-9|CAB60315.3| 583|Caenorhabditis elegans Hypothetical ... 28 5.4
Z74031-17|CAN86923.1| 380|Caenorhabditis elegans Hypothetical p... 28 7.2
Z74031-16|CAA98452.1| 378|Caenorhabditis elegans Hypothetical p... 28 7.2
AL132862-19|CAB70231.2| 640|Caenorhabditis elegans Hypothetical... 27 9.5
>U14635-7|AAC46658.2| 521|Caenorhabditis elegans Hypothetical
protein C27H5.4a protein.
Length = 521
Score = 31.1 bits (67), Expect = 0.77
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = +3
Query: 318 LPPRYLQVCQTTPLLWRAVRXNDPYSTAAGDNVFC 422
LPP YL+V Q L+W AV NDP D FC
Sbjct: 43 LPPSYLKVVQILFLVWNAV--NDPMMGYMQDLGFC 75
>U14635-6|AAP86617.1| 517|Caenorhabditis elegans Hypothetical
protein C27H5.4b protein.
Length = 517
Score = 31.1 bits (67), Expect = 0.77
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = +3
Query: 318 LPPRYLQVCQTTPLLWRAVRXNDPYSTAAGDNVFC 422
LPP YL+V Q L+W AV NDP D FC
Sbjct: 39 LPPSYLKVVQILFLVWNAV--NDPMMGYMQDLGFC 71
>AF003739-5|AAK84629.2| 422|Caenorhabditis elegans Temporarily
assigned gene nameprotein 96 protein.
Length = 422
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -3
Query: 575 QYVRLHHSFGEPFVVCSGLADMSGVHCVLLNIVDVPEATDAVVTEVIVDADTEDVVTS 402
Q+V+L+ E V C G ++ G H + P A DA T + DT +V S
Sbjct: 10 QFVKLYGIEPEVRVTCPGRVNLIGEHIDYHDYGVFPMAIDAATTILAAKNDTNSIVFS 67
>AF068713-20|AAC17803.2| 309|Caenorhabditis elegans Hypothetical
protein T24A6.16 protein.
Length = 309
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = -3
Query: 395 RIGVVXAHCSPQKWSCLTHLEIPRREL----SQPPKRSPSSTKSVRVWWRRGPIHVLVE 231
+IG + AH +P W+C H I + EL S +R S+ + + ++G LVE
Sbjct: 177 KIGHIEAHAAPVTWNCNFHQGIEKWELLAMGSDTEERVSSAARLADILRKQGVRGSLVE 235
>AC006636-2|AAF39797.1| 325|Caenorhabditis elegans Hypothetical
protein F40C5.1 protein.
Length = 325
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = -3
Query: 395 RIGVVXAHCSPQKWSCLTHLEIPRREL----SQPPKRSPSSTKSVRVWWRRGPIHVLVE 231
+IG + AH +P W+C H I + EL S +R S+ + + ++G LVE
Sbjct: 177 KIGHIEAHAAPVTWNCNFHQGIEKWELLAMGSDTEERVSSAARLADILRKQGVRGSLVE 235
>AL110479-9|CAB60315.3| 583|Caenorhabditis elegans Hypothetical
protein Y105C5B.11 protein.
Length = 583
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 560 EAEHTDARDRRICHSRRRENHFAV 631
+ EH D D C+ +RRE HF V
Sbjct: 305 KCEHADPHDWLHCNRKRRERHFIV 328
>Z74031-17|CAN86923.1| 380|Caenorhabditis elegans Hypothetical
protein F32D8.7b protein.
Length = 380
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/79 (21%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = -3
Query: 503 VHCVLLNIV--DVPEATDAVVTEVIVDADTEDVVTSCGRIGVVXAHCSPQKWSCLTHLEI 330
V+ +L+ +V +P+ D + ++ ++ ED VTS + + C P +C +
Sbjct: 28 VNSILIGLVASQLPDELDPFLEKLFDTSECEDFVTSSDYTNIATSKCDPH--TC----DF 81
Query: 329 PRRELSQPPKRSPSSTKSV 273
PR+ ++P + S+ ++
Sbjct: 82 PRQICARPAAKFQDSSANI 100
>Z74031-16|CAA98452.1| 378|Caenorhabditis elegans Hypothetical
protein F32D8.7a protein.
Length = 378
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/79 (21%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = -3
Query: 503 VHCVLLNIV--DVPEATDAVVTEVIVDADTEDVVTSCGRIGVVXAHCSPQKWSCLTHLEI 330
V+ +L+ +V +P+ D + ++ ++ ED VTS + + C P +C +
Sbjct: 28 VNSILIGLVASQLPDELDPFLEKLFDTSECEDFVTSSDYTNIATSKCDPH--TC----DF 81
Query: 329 PRRELSQPPKRSPSSTKSV 273
PR+ ++P + S+ ++
Sbjct: 82 PRQICARPAAKFQDSSANI 100
>AL132862-19|CAB70231.2| 640|Caenorhabditis elegans Hypothetical
protein Y73F8A.25a protein.
Length = 640
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +3
Query: 312 TQLPPRYLQVCQTTPLLWRAVRXNDPYSTAAGDNVFCVCIHNDFGDHSVRSF 467
TQLPPR + Q P++ DP +T+A ++ +C + + +++F
Sbjct: 248 TQLPPRMEALEQEDPIIREWRLKVDPENTSATPVIYSMCSGDKMQEELMQAF 299
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,118,033
Number of Sequences: 27780
Number of extensions: 311182
Number of successful extensions: 895
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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