Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060656.seq
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    25   0.68 
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    25   0.68 
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    25   0.68 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.3  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 516 SQAAAHDKGLPKAMVKPNILTHVIEGYVIPGGGRTISR*T 635
           S+   +++  P++  KP+++        I GGG T SR T
Sbjct: 256 SETNHNERSTPRSHAKPSLIDDEPTEVTIGGGGTTSSRRT 295


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 516 SQAAAHDKGLPKAMVKPNILTHVIEGYVIPGGGRTISR*T 635
           S+   +++  P++  KP+++        I GGG T SR T
Sbjct: 256 SETNHNERSTPRSHAKPSLIDDEPTEVTIGGGGTTSSRRT 295


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 516 SQAAAHDKGLPKAMVKPNILTHVIEGYVIPGGGRTISR*T 635
           S+   +++  P++  KP+++        I GGG T SR T
Sbjct: 256 SETNHNERSTPRSHAKPSLIDDEPTEVTIGGGGTTSSRRT 295


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 468 RYINYVQEHAMYSAHISQAAAHDKGLPKAMVKPNILTHVIEGYV 599
           R +N++  H  Y   +S+    +K L       NI+TH+I  YV
Sbjct: 759 RSVNHLLTHHEYDYELSRGYIDEKILENQ----NIITHMILNYV 798


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 365 PQKWSCLTHLEIPRRELSQPPKRSPSSTK-SVRVWWRRGP 249
           P K   + H ++     S PP+++P S K S R   RR P
Sbjct: 376 PSKNPAMGHWQMSCVACSPPPRQTPPSRKESGRRRRRRTP 415


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,371
Number of Sequences: 438
Number of extensions: 4043
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)