Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060656.seq
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27550.1 68416.m03443 group II intron splicing factor CRS1-re...    30   1.7  
At3g61680.1 68416.m06912 lipase class 3 family protein contains ...    29   2.9  
At1g08620.1 68414.m00955 transcription factor jumonji (jmj) fami...    29   2.9  
At2g29650.2 68415.m03604 inorganic phosphate transporter, putati...    28   5.0  
At2g29650.1 68415.m03603 inorganic phosphate transporter, putati...    28   5.0  

>At3g27550.1 68416.m03443 group II intron splicing factor
           CRS1-related contains weak similarity to CRS1 [Zea mays]
           gi|9837550|gb|AAG00595
          Length = 491

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +2

Query: 533 RQRAPQ--SYGEAEHTDARDRRICHSRRREN 619
           R R P+  SYG+A H   R+ R  HS+RR N
Sbjct: 328 RSRTPELRSYGDASHGFRRNDRDTHSQRRPN 358


>At3g61680.1 68416.m06912 lipase class 3 family protein contains
           Pfam profile PF01764: Lipase
          Length = 649

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 7/38 (18%)
 Frame = -3

Query: 554 SFGEPFVVCSG---LA----DMSGVHCVLLNIVDVPEA 462
           +FG PFV C G   LA    D S VHCV+++   VP A
Sbjct: 451 TFGSPFVFCGGEKILAELGLDESHVHCVMMHRDIVPRA 488


>At1g08620.1 68414.m00955 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 1183

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 392 IGVVXAHCSPQKWSCLTHLE 333
           +      CSP+K+SCLTH++
Sbjct: 600 LSAAGCRCSPEKYSCLTHVK 619


>At2g29650.2 68415.m03604 inorganic phosphate transporter, putative
           similar to brain specific Na+-dependent inorganic
           phosphate cotransporter [Rattus norvegicus] GI:507415;
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 398

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 62  NRLLHRRPCSRSLRNSRWSPSRQRMRPYPRRQS 160
           NR   +   SRSLRN + SP   R+  YPR +S
Sbjct: 19  NRPPEKTSSSRSLRNLKPSPKSLRVWIYPRNRS 51


>At2g29650.1 68415.m03603 inorganic phosphate transporter, putative
           similar to brain specific Na+-dependent inorganic
           phosphate cotransporter [Rattus norvegicus] GI:507415;
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 512

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 62  NRLLHRRPCSRSLRNSRWSPSRQRMRPYPRRQS 160
           NR   +   SRSLRN + SP   R+  YPR +S
Sbjct: 19  NRPPEKTSSSRSLRNLKPSPKSLRVWIYPRNRS 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,353,304
Number of Sequences: 28952
Number of extensions: 292260
Number of successful extensions: 827
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)