Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060655.seq
         (686 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    25   0.44 
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    23   3.1  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    23   3.1  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    23   3.1  
DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    23   3.1  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   5.4  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   7.2  
AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochr...    21   7.2  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 8   RCDVLLNNYSLLHNNPTMPNVKFYYFPVKAL 100
           R  +LL +   L +N   P + FYY P+K L
Sbjct: 111 RPKLLLKHNLFLLDNIVKPIIAFYYKPIKTL 141


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 259 RCGALGVLLAVDLQHRHLT 203
           RC A+GV + VD    H+T
Sbjct: 101 RCNAVGVRIYVDTVINHMT 119


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 259 RCGALGVLLAVDLQHRHLT 203
           RC A+GV + VD    H+T
Sbjct: 102 RCNAVGVRIYVDTVINHMT 120


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 259 RCGALGVLLAVDLQHRHLT 203
           RC A+GV + VD    H+T
Sbjct: 102 RCNAVGVRIYVDTVINHMT 120


>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = -1

Query: 263 LQMRCSGRTACRRSPAPASDRTES*V*ILASFQKKCDCLR 144
           LQ  C+G  A  +       + +  V     F K+C C R
Sbjct: 46  LQRICNGEVAVNKCEGSCKSQVQPSVITPTGFLKECYCCR 85


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 275 RPRYLQMRCSGRTACRRSPAPA 210
           R   +  +C G     R+PAPA
Sbjct: 259 RHHLVHHKCGGEEEAERAPAPA 280


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 176 PEFKPKTPFGQMPVLEIDGK 235
           P  KP+TPF    +L ++ K
Sbjct: 114 PNRKPRTPFTTQQLLALEKK 133


>AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q3 protein.
          Length = 143

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 41  LHNNPTMPNVKFYYFPVKALGESQRL 118
           LH  PT  N++   +  +A+ ES RL
Sbjct: 50  LHRKPTYNNLQEMKYLERAIKESLRL 75


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,544
Number of Sequences: 336
Number of extensions: 2302
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)