Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060655.seq
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    27   2.5  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    27   2.5  
SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa...    26   4.4  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   4.4  
SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual       26   5.9  

>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 238 VRPEHRICRYLGRKYGLAGANDEEAFEIDQNVEFLNDIRASAAS 369
           V   HR  R   +K  L+ + +  +  +D N+  LN ++ SA+S
Sbjct: 36  VSSTHRQTRSQSKKPSLSSSAEPPSESLDDNISALNSLQRSASS 79


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/64 (26%), Positives = 26/64 (40%)
 Frame = +3

Query: 60  CRTLSSTISPSRPSARARGCCWLTAARSSKTIAFLLKTGQNSNLRLRSVRCRCWRSTASS 239
           C +   T +   P++  R C      R  KT++  +  G + N  LR +      STA  
Sbjct: 280 CDSCGGTGTTIPPNSACRSCMGSGTVRERKTVSIDIPPGIDDNTVLRVMGAGNDASTAKG 339

Query: 240 TPRA 251
            P A
Sbjct: 340 GPNA 343


>SPCC18B5.06 |erf1|sup45|translation release factor
           eRF1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 516 FVYAGMYDYLKAMLQKPDLEQ 578
           FV  G+YDY+ +M  K DL+Q
Sbjct: 212 FVARGLYDYIFSMAVKLDLKQ 232


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +2

Query: 11  CDVLLNNYSLLHNNPTMPNVKFYYFPVKALGESQRLLLAYGGQEFED 151
           CD +L N+S     P  P V F   P++ + +       Y  +E  D
Sbjct: 354 CDEILKNWSPGLEKPAKPEVNFNNLPLEIVNDDDSEDDIYAAEELLD 400


>SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 336

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -3

Query: 513 RPGQLAKRDMTVVLRQYL 460
           R G+L KR +T+VLR+YL
Sbjct: 86  RVGELEKRRVTMVLRKYL 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,203,428
Number of Sequences: 5004
Number of extensions: 37583
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)