Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060655.seq
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0488 - 34281623-34283431 30 2.0
12_02_0343 - 17748882-17753396 29 3.5
11_01_0613 + 4904869-4905126,4905389-4906138,4907708-4907767 29 3.5
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 29 4.6
01_04_0045 + 15392817-15392963,15393108-15393156,15393463-15393911 29 4.6
12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-53... 28 6.0
11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-45... 28 6.0
12_01_0629 - 5183504-5184970 28 8.0
04_04_0409 + 24992944-24993421,24993920-24994000,24994400-249946... 28 8.0
03_03_0196 + 15331604-15331646,15332141-15332260,15334106-153342... 28 8.0
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 28 8.0
>03_06_0488 - 34281623-34283431
Length = 602
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Frame = +3
Query: 81 ISPSRPSARARGCCWLTAARSSKT-----IAFLLKTGQNSNLRLRSVRCRCWRSTASSTP 245
+SPS A + C L AA S+ T +AFLLK+G ++N V R + ++AS+ P
Sbjct: 13 LSPSAARAAEQHCLRLLAASSTPTSLLQSVAFLLKSGLHAN---SLVLTRLFAASASAAP 69
>12_02_0343 - 17748882-17753396
Length = 1504
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = -3
Query: 336 LHVLVDLEGL--LVIGPGESVLA--TEVPADAVLWAYCLPSISSTGI*PNGV 193
LH+L +E L +S+ A +++P LW C P+ISS G PN +
Sbjct: 1372 LHILTSIEDLEFYCCEKLQSLPAELSQIPTIKTLWISCCPAISSLGNLPNSL 1423
>11_01_0613 + 4904869-4905126,4905389-4906138,4907708-4907767
Length = 355
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 536 RLPEGDAPEAGSGAEVPGLQEAHRXGLAIP 625
R+P ++P+AG+ E+ G+ H G+A+P
Sbjct: 39 RVPPPESPDAGARRELLGIDVEHIVGVALP 68
>02_05_0366 - 28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 450 ETQ*DTDEEQRSYRAWQVDLGDFVYAGMYDYLKAMLQKPDLEQK 581
E + D D+E SY +W VD Y +++A+ QK E++
Sbjct: 1572 EAEIDEDQEPLSYESWDVDFATTAYR---QHVEALAQKQLFEEQ 1612
>01_04_0045 + 15392817-15392963,15393108-15393156,15393463-15393911
Length = 214
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +2
Query: 68 VKFYYFPVKALGESQRLLLAYGGQEFE----DNRISSENWPEFKPKTPFGQMPVLEIDG 232
+K Y P+ + L G+++E D I+ PE + PFGQ+P L+ DG
Sbjct: 3 MKVYGLPMSTNVARVLVCLEEAGEQYEVVPIDFSIAEHKSPEHTSRNPFGQVPALQ-DG 60
>12_01_0063 -
535364-536085,536226-536439,536989-537981,538238-538255,
538601-538860,539950-540073,540978-541310,541447-541531,
541683-541768,541843-541941,542041-542180,542717-543043,
543163-543774,543887-543971,543972-544067,544147-544500,
544536-544559,544597-544707,544811-544894,545468-545546,
546122-546279,546412-546528,546622-546780,546857-546939,
547525-547627,549184-549495
Length = 1925
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/63 (23%), Positives = 27/63 (42%)
Frame = +2
Query: 41 LHNNPTMPNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKPKTPFGQMPVL 220
L +PT+ VK + ++R+L Y G + E W K T + +P+
Sbjct: 171 LQLDPTLEEVKKLCNTCRKFARTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPIT 230
Query: 221 EID 229
++D
Sbjct: 231 DLD 233
>11_01_0061 -
456521-457389,457534-457659,458377-459307,459564-459581,
459924-460183,461834-461918,462587-462919,463053-463137,
463289-463374,463455-463556,463656-463795,464332-464658,
464778-465389,465502-465586,465587-465682,465762-466115,
466212-466322,466426-466509,467086-467164,467742-467899,
468034-468150,468240-468398,468475-468557,469098-469200,
470784-471080
Length = 1899
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/63 (23%), Positives = 27/63 (42%)
Frame = +2
Query: 41 LHNNPTMPNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKPKTPFGQMPVL 220
L +PT+ VK + ++R+L Y G + E W K T + +P+
Sbjct: 166 LQLDPTLEEVKKLCNTCRKFARTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPIT 225
Query: 221 EID 229
++D
Sbjct: 226 DLD 228
>12_01_0629 - 5183504-5184970
Length = 488
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 498 QVDLGDFVYAGMYDYLKAMLQKPDLEQKYPAFRKPIXAVWPSPRS 632
+VD+G +Y GM+D L +L D + I A+ P +
Sbjct: 166 EVDIGQVLYHGMFDLLANVLLSVDAHPNLRDLMEDIVAILAKPNA 210
>04_04_0409 +
24992944-24993421,24993920-24994000,24994400-24994622,
24994709-24994850,24995166-24995555
Length = 437
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 202 RSDAGAGDRRQAVRPEHRICRYLGRKYGLAGAND 303
R GA ++ + +H+I L R+ GLA AND
Sbjct: 111 RPTFGARKKKTLCQTDHKIVSMLEREVGLASAND 144
>03_03_0196 +
15331604-15331646,15332141-15332260,15334106-15334221,
15334661-15334749,15334885-15334927,15335567-15335741,
15335840-15335971,15336046-15336383,15336791-15337129,
15337293-15337975,15338228-15338807,15339356-15339679,
15340149-15340262
Length = 1031
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 354 ANVVQELHVLVDLEGLLVIGPGESVL 277
AN + E+H+ + LE LL +GP ++ L
Sbjct: 550 ANGINEMHLQIRLEKLLTLGPDDNQL 575
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 149 DNRISSENWPEFKPKTPFGQMPVLEIDGKQ 238
D R ++ P F PFGQ+PVL+ DG +
Sbjct: 39 DLRTAAHKQPHFLALNPFGQIPVLQ-DGDE 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,484,151
Number of Sequences: 37544
Number of extensions: 286957
Number of successful extensions: 952
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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