Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060655.seq
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19919| Best HMM Match : GST_N (HMM E-Value=4.7e-22) 62 4e-10
SB_11982| Best HMM Match : GST_N (HMM E-Value=7.9e-15) 60 2e-09
SB_37695| Best HMM Match : GST_N (HMM E-Value=2.4e-24) 55 6e-08
SB_28555| Best HMM Match : GST_N (HMM E-Value=3.5e-18) 47 2e-05
SB_54755| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.66
SB_48679| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_15869| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_25424| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_7319| Best HMM Match : SRCR (HMM E-Value=0) 29 4.7
SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_5046| Best HMM Match : GST_N (HMM E-Value=2.5e-05) 28 8.1
>SB_19919| Best HMM Match : GST_N (HMM E-Value=4.7e-22)
Length = 79
Score = 62.1 bits (144), Expect = 4e-10
Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Frame = +2
Query: 59 MPNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKPK--TPFGQMPVLEIDG 232
MP+ K YYF + E RL+ A G EFEDNR++ WP+ K + PFGQ+P+L ID
Sbjct: 1 MPSYKLYYFNARGRAEPARLVFAAAGIEFEDNRMAMGEWPKVKKELHAPFGQVPLLVIDD 60
Query: 233 K 235
K
Sbjct: 61 K 61
>SB_11982| Best HMM Match : GST_N (HMM E-Value=7.9e-15)
Length = 221
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Frame = +2
Query: 59 MPNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKP--KTPFGQMPVLEIDG 232
MPN K YF + E RL A GG +ED R++ E W + K KT G +PVLE+DG
Sbjct: 1 MPNYKLIYFNTRGRAEPTRLCFAAGGIPYEDVRLTGEEWTKMKAENKTIMGYLPVLEVDG 60
Query: 233 KQYAQ 247
QY +
Sbjct: 61 IQYCE 65
>SB_37695| Best HMM Match : GST_N (HMM E-Value=2.4e-24)
Length = 102
Score = 54.8 bits (126), Expect = 6e-08
Identities = 32/72 (44%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Frame = +2
Query: 29 NYSLLHNNPTMPNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISS-ENWPEFKPK--TP 199
N SLL P MP+ K +YF + E RL A G E+ED R E W KP+ P
Sbjct: 14 NISLLPF-PKMPSYKLHYFNARGRAEPARLAFAAAGIEYEDKRFEGREEWLRVKPELDPP 72
Query: 200 FGQMPVLEIDGK 235
FGQ+P+L ID K
Sbjct: 73 FGQVPLLVIDDK 84
>SB_28555| Best HMM Match : GST_N (HMM E-Value=3.5e-18)
Length = 195
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Frame = +2
Query: 62 PNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKP--KTPFGQMPVLEI-DG 232
P + YF +A E R+LL F D R++ +W K + PFG++P+LEI DG
Sbjct: 3 PTYRVVYFDARARAECIRVLLHLADVPFTDERVAPPDWAAMKTSGRCPFGELPLLEISDG 62
Query: 233 KQYAQ 247
++ AQ
Sbjct: 63 RKLAQ 67
>SB_54755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 31.5 bits (68), Expect = 0.66
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 80 YFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFK 187
YF V+A GE R+LL F + R E+WP K
Sbjct: 95 YFDVRARGECIRVLLHLADVPFTEERHGLEDWPAVK 130
>SB_48679| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 31.1 bits (67), Expect = 0.87
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 220 GDRRQA-VRPEHRICRYLGRKYGLAGANDEEAFEID 324
GD++ + + I RY+GRKY + G +EE +D
Sbjct: 10 GDKKHIKITQSNAILRYIGRKYDMCGKTEEEKVIVD 45
>SB_15869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1420
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +3
Query: 468 DEEQRSYRAWQVDLGDFVYAGMYDYLKAMLQKPDLEQKYPAFRKPIXAVW 617
+E + S Q+ + D + + + + LQ D+ Q+YPA R+ + ++W
Sbjct: 510 EEPEVSLDNLQIKIQDAIPEDVTNLVIQYLQNLDINQEYPASRETVVSIW 559
>SB_25424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 68 VKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKPK 193
V +YF + E RL++ G + + + E+WP K K
Sbjct: 54 VTLHYFGSRGKAEGIRLMMEDNGVLYAETNYTKEDWPTVKQK 95
>SB_7319| Best HMM Match : SRCR (HMM E-Value=0)
Length = 957
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 53 GYCAIMNNCSVARRTSC 3
G C+++NNCS A TSC
Sbjct: 543 GPCSLLNNCSSANSTSC 559
>SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2630
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 53 GYCAIMNNCSVARRTSC 3
G C+ +NNCS A TSC
Sbjct: 487 GSCSFLNNCSSANYTSC 503
>SB_5046| Best HMM Match : GST_N (HMM E-Value=2.5e-05)
Length = 280
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +2
Query: 8 RCDVLLNNYSLLHNNPTMPNVKFYYFPVKALGESQRLLLAYGGQEFEDNR 157
R V L +Y + P+ F + LG+ RLLL Y ++FED R
Sbjct: 168 RLKVKLRSYGISGATLRWPDA-FLAHRCQKLGQPIRLLLKYTNEDFEDKR 216
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,475,353
Number of Sequences: 59808
Number of extensions: 308188
Number of successful extensions: 784
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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