Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060655.seq
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   3.6  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   4.8  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    22   6.3  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 29  NYSLLHNNPTMPNVKFYYFPVKALGESQRLLLA 127
           ++ L HN+   PN+  YY    AL     +L A
Sbjct: 302 HWQLPHNSTNPPNILLYYRDSLALSVFALILTA 334


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 85  PRQGPRREPEAAAGLRRP 138
           P    RREPEA  G  RP
Sbjct: 112 PHPRLRREPEAEPGNNRP 129



 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 85  PRQGPRREPEAAAGLRRP 138
           P    RREPEA  G  RP
Sbjct: 138 PHPRLRREPEAEPGNNRP 155


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 176 PEFKPKTPFGQMPVLEIDGK 235
           P  KP+TPF    +L ++ K
Sbjct: 8   PNRKPRTPFTTQQLLSLEKK 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,764
Number of Sequences: 438
Number of extensions: 2923
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)