Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060655.seq
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03090.1 68416.m00305 sugar transporter family protein simila...    29   3.8  
At3g08850.1 68416.m01029 transducin family protein / WD-40 repea...    28   5.0  
At5g66960.1 68418.m08442 prolyl oligopeptidase family protein si...    28   6.7  
At5g17220.1 68418.m02018 glutathione S-transferase, putative           28   6.7  
At2g14240.1 68415.m01587 hypothetical protein  and genefinder          27   8.8  

>At3g03090.1 68416.m00305 sugar transporter family protein similar
           to xylose permease [Bacillus megaterium]  GI:1924928;
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 503

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +3

Query: 39  YCTITRQCRTLSSTISPSRPSARARGCCWLTAARSSKTIAFLLKTGQNSNLRLRSVRCRC 218
           + T+    R + +TI P  P     G CWL A+     +  L   G   NL+  ++R  C
Sbjct: 203 WITVISGWRYMYATILPF-PVIMGTGMCWLPASPRWLLLRALQGQGNGENLQQAAIRSLC 261


>At3g08850.1 68416.m01029 transducin family protein / WD-40 repeat
           family protein similar to WD-repeat protein mip1
           (SP:P87141) [Schizosaccharomyces pombe]; contains Pfam
           PF00400: WD domain, G-beta repeat (5 copies, 1 weak)
          Length = 1344

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/60 (23%), Positives = 27/60 (45%)
 Frame = +2

Query: 50  NPTMPNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKPKTPFGQMPVLEID 229
           +PT+  V+      +   +++R+L  Y G        + E W   K  T +  +P+ E+D
Sbjct: 173 DPTVDEVRKLCLTCRKYAKTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPISELD 232


>At5g66960.1 68418.m08442 prolyl oligopeptidase family protein
           similar to OpdB [Treponema denticola] GI:13786054;
           contains Pfam profiles PF00326: prolyl oligopeptidase
           family, PF02897: Prolyl oligopeptidase, N-terminal
           beta-propeller domain
          Length = 792

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 162 LLKTGQNSNLRLRSVRCRCWRSTASSTPRAPHLQVPR 272
           L +T    N R R  +CRC++   S  P  P   +P+
Sbjct: 5   LSRTFSRHNCRFRRQQCRCYKPPKSPPPPPPPPALPK 41


>At5g17220.1 68418.m02018 glutathione S-transferase, putative
          Length = 214

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
 Frame = +2

Query: 110 QRLLLAY--GGQEFEDNRISSENWPEFKP----KTPFGQMPVLEIDG 232
           QR+LL +   G EFE   I  + + + KP    + PFGQ+P +E DG
Sbjct: 15  QRVLLCFLEKGIEFEIIHIDLDTFEQKKPEHLLRQPFGQVPAIE-DG 60


>At2g14240.1 68415.m01587 hypothetical protein  and genefinder
          Length = 128

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = +3

Query: 54  RQCRTLSSTISPSRPSARARGCCW----LTAARSSKTIAFLLKTGQNSNLRLRS 203
           R+   L     P R    + GCCW     TAAR  ++   L KT ++    +RS
Sbjct: 8   REAVRLEKKTLPWRQKRSSCGCCWRRRVATAAREEESRRLLEKTRRDGEEEVRS 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,878,472
Number of Sequences: 28952
Number of extensions: 209425
Number of successful extensions: 657
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)