Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060654.seq
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    73   3e-14
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al...    33   0.029
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    33   0.029
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   4.4  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    26   4.4  
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb...    26   5.9  
SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces pombe...    26   5.9  

>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 73.3 bits (172), Expect = 3e-14
 Identities = 45/127 (35%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
 Frame = +1

Query: 274 MSKAERLSLRDESRQMFYHAYHAYMENAYPADELMPLSCKGRWXGI-TPSRGDMDDALGN 450
           ++ A  + LR+ SR++FYH Y+ YM+ A+P DEL PLSC+G       P+   ++D  G+
Sbjct: 27  INSARMVELRETSRRLFYHGYNNYMQFAFPNDELAPLSCEGLGPDYENPNNIGVNDVRGD 86

Query: 451 FXXXXXXXXXXXXXMGD---FSDLIMQSNSL*KMSLLTKILVVSVFETNIRMLGGLLSAH 621
           +             +GD   F D + +          TK   V VFE  IR+LGGLLS+H
Sbjct: 87  YLLTLVDVLDTLVVLGDREGFQDAVDKVIHHINFERDTK---VQVFEATIRILGGLLSSH 143

Query: 622 VLAETLK 642
           + A   K
Sbjct: 144 IFASEEK 150


>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
           1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 33.5 bits (73), Expect = 0.029
 Identities = 15/22 (68%), Positives = 20/22 (90%)
 Frame = +1

Query: 568 VSVFETNIRMLGGLLSAHVLAE 633
           VSVFET IR+LGGLLS++ L++
Sbjct: 126 VSVFETTIRILGGLLSSYHLSQ 147


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 33.5 bits (73), Expect = 0.029
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -2

Query: 557  LVKRDIFYNELDCMIKSEKSPITTKVSKLSTNVNEKFPKASSI 429
            L+++   Y E   +  SE   ++ KVS L+  VNE  PKAS +
Sbjct: 1208 LLRQSASYKEKLSLASSENKDLSNKVSSLTKQVNELSPKASKV 1250


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 370 HQLDMHSPCKHDKHDRTSALIH 305
           H  D H  C H + DR S L++
Sbjct: 325 HYFDFHKECSHMRWDRVSLLLN 346


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 600 QHPNICFKD*NNQYLGQK 547
           Q  N+CFKD + +Y+GQK
Sbjct: 423 QLQNLCFKDNDIKYIGQK 440


>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
 Frame = +3

Query: 444 RKFLIDIGGQLRHFSC---DGGLFG 509
           ++F+IDI   LRH+ C   +G L+G
Sbjct: 144 KEFIIDISAGLRHWICVTNEGNLYG 168


>SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -3

Query: 565 PISWSKETSFITSWIA*LNPKSPPSQLKCLSCPPMSMRNFLK 440
           P +W     F+T  +   +  +P  + K L C P  M N L+
Sbjct: 236 PENWKGSVGFVTQELIKAHFPAPSPETKVLICGPTPMVNSLR 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,105
Number of Sequences: 5004
Number of extensions: 60833
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)