Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060654.seq
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0881 + 32692345-32692497,32693167-32693286,32693382-326934...    78   8e-15
02_05_0701 + 31022485-31022648,31023569-31023611,31023712-310237...    56   3e-08
05_02_0107 - 6667944-6668214,6668376-6668524,6668654-6668851,666...    44   1e-04
04_04_1078 - 30655212-30655289,30655614-30655811,30655916-306560...    28   6.0  
03_06_0244 + 32613914-32614666                                         28   8.0  

>01_06_0881 +
           32692345-32692497,32693167-32693286,32693382-32693474,
           32694197-32694283,32696052-32696063,32696553-32696625,
           32697073-32697182,32697608-32697658,32698154-32698242,
           32698518-32698599,32698680-32698793,32699015-32699094,
           32699749-32699884,32700210-32700280,32700363-32700457,
           32700467-32700597,32701009-32701398
          Length = 628

 Score = 77.8 bits (183), Expect = 8e-15
 Identities = 49/122 (40%), Positives = 65/122 (53%)
 Frame = +1

Query: 265 GLRMSKAERLSLRDESRQMFYHAYHAYMENAYPADELMPLSCKGRWXGITPSRGDMDDAL 444
           G+  S+A RL  RDE + MFYHA+  YM++A+P DEL PLSC+G            +D+L
Sbjct: 39  GVTPSEARRL--RDEVKDMFYHAFDGYMQHAFPLDELRPLSCQG------------EDSL 84

Query: 445 GNFXXXXXXXXXXXXXMGDFSDLIMQSNSL*KMSLLTKILVVSVFETNIRMLGGLLSAHV 624
           G +             +GD          + K         VSVFETNIR+LGGLLSAH+
Sbjct: 85  GGYALTLIDSLDTLALLGDKERFDAAVEWVGKNVRFDINKTVSVFETNIRILGGLLSAHL 144

Query: 625 LA 630
           +A
Sbjct: 145 IA 146


>02_05_0701 +
           31022485-31022648,31023569-31023611,31023712-31023777,
           31024007-31024062,31024091-31024190,31024290-31024472,
           31024953-31025001,31025089-31025169,31025209-31025268,
           31025394-31025514,31025612-31025693,31025783-31025868,
           31026011-31026111,31026246-31026387,31026488-31026638,
           31026710-31026937
          Length = 570

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 2/126 (1%)
 Frame = +1

Query: 280 KAERLSLRDESRQMFYHAYHAYMENAYPADELMPLSCKGRWXGITP--SRGDMDDALGNF 453
           +  RL +R++  +MFYHAY  YM  A+P DEL PL+ K     ++   +  +++D + + 
Sbjct: 42  RGRRLYMRNKVLEMFYHAYDNYMTYAFPHDELKPLT-KSFTDSLSELGNLNNVNDDIVSS 100

Query: 454 XXXXXXXXXXXXXMGDFSDLIMQSNSL*KMSLLTKILVVSVFETNIRMLGGLLSAHVLAE 633
                        +G+ ++       L +         +++FE NIR+LGGL+S H+LA+
Sbjct: 101 ENTIIRKVDSLVVLGNLTEFERGVLWLSENLTFDVDARINLFECNIRLLGGLISGHILAK 160

Query: 634 TLKSDI 651
              S +
Sbjct: 161 EHSSHL 166


>05_02_0107 -
           6667944-6668214,6668376-6668524,6668654-6668851,
           6668989-6669250,6669378-6670327,6670907-6671022,
           6671121-6671280
          Length = 701

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 4/130 (3%)
 Frame = +1

Query: 253 RETSGLRMSKAERLSLRDES-RQMFYHAYHAYMENAYPADELMPLSCKGRWXGITPSRGD 429
           R  S L  S     +LR +  ++ F HA+  Y   A   DELMPL+ +G           
Sbjct: 178 RNNSLLLQSPQSEWTLRQKKVKEAFEHAWSGYRNYAMGYDELMPLTRRGI---------- 227

Query: 430 MDDALGNFXXXXXXXXXXXXXMGDFSDLIMQSNSL*KMSLLTKILV---VSVFETNIRML 600
             D LG               MG   D++ +++   + +L+ K+     V++FET IR+L
Sbjct: 228 --DGLGGLGATVVDSLDTAIIMGA-DDVVSEASKWIEDNLMKKLSEKGQVNLFETTIRVL 284

Query: 601 GGLLSAHVLA 630
           GGLLSA+ L+
Sbjct: 285 GGLLSAYHLS 294


>04_04_1078 -
           30655212-30655289,30655614-30655811,30655916-30656086,
           30656172-30656252,30656464-30656565,30656671-30656779,
           30656900-30656965,30657566-30657630,30658386-30658475,
           30658952-30659123,30659831-30659943,30660046-30660219,
           30660300-30660347,30662041-30662205
          Length = 543

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +1

Query: 301 RDESRQMFYHAYHAYMENAYPADELMPLSCKG 396
           R++ ++   HA+++Y++ A+  DEL P S  G
Sbjct: 104 REKVKEAMAHAWNSYVKYAWGMDELQPQSKNG 135


>03_06_0244 + 32613914-32614666
          Length = 250

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/64 (25%), Positives = 27/64 (42%)
 Frame = +1

Query: 253 RETSGLRMSKAERLSLRDESRQMFYHAYHAYMENAYPADELMPLSCKGRWXGITPSRGDM 432
           +ET+  R+    R +     RQ  +  + A    A     L+P + + RW     SR  +
Sbjct: 184 KETAETRLRSGRRRAGAGRRRQGSWARHQAMQWKASAVSRLVPAAHRRRWKASVVSRRSL 243

Query: 433 DDAL 444
           D A+
Sbjct: 244 DAAI 247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,886,462
Number of Sequences: 37544
Number of extensions: 368131
Number of successful extensions: 656
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)