Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060654.seq
(687 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25089| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 1e-14
SB_35245| Best HMM Match : DUF26 (HMM E-Value=2.4) 61 9e-10
SB_33758| Best HMM Match : DUF630 (HMM E-Value=9.6) 61 9e-10
SB_39877| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.013
SB_43428| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0) 32 0.50
SB_55679| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 28 6.2
SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89) 28 6.2
SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27) 28 8.1
SB_20760| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_25089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 505
Score = 77.0 bits (181), Expect = 1e-14
Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Frame = +1
Query: 277 SKAERLSLRDESRQMFYHAYHAYMENAYPADELMPLSCKGRWXG-ITPSRGDMDDALGNF 453
S++ERL R+++R+MFY Y +YM A+P DEL P+ C GR P+ +++D LG++
Sbjct: 98 SESERLKSREDARRMFYFGYESYMRYAFPHDELDPIHCTGRGPDRKNPTNININDVLGDY 157
Query: 454 XXXXXXXXXXXXXMGDFSDLIMQSNSL*KMSLLTKILVVSVFETNIRMLGGLLSAHVL 627
MG+ ++ + + + V VFE NIR+LG LLSAH++
Sbjct: 158 SLTLVEALGTLAVMGNSTEFKLAVQHVIDNVHFDRKSTVQVFEANIRVLGSLLSAHMI 215
>SB_35245| Best HMM Match : DUF26 (HMM E-Value=2.4)
Length = 290
Score = 60.9 bits (141), Expect = 9e-10
Identities = 26/31 (83%), Positives = 28/31 (90%)
Frame = +1
Query: 355 AYPADELMPLSCKGRWXGITPSRGDMDDALG 447
AYPADELMPLSCKGR G+ PSRGD+DDALG
Sbjct: 146 AYPADELMPLSCKGRVRGVDPSRGDVDDALG 176
>SB_33758| Best HMM Match : DUF630 (HMM E-Value=9.6)
Length = 114
Score = 60.9 bits (141), Expect = 9e-10
Identities = 26/31 (83%), Positives = 28/31 (90%)
Frame = +1
Query: 355 AYPADELMPLSCKGRWXGITPSRGDMDDALG 447
AYPADELMPLSCKGR G+ PSRGD+DDALG
Sbjct: 3 AYPADELMPLSCKGRVRGVDPSRGDVDDALG 33
>SB_39877| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 37.1 bits (82), Expect = 0.013
Identities = 32/110 (29%), Positives = 50/110 (45%)
Frame = +1
Query: 301 RDESRQMFYHAYHAYMENAYPADELMPLSCKGRWXGITPSRGDMDDALGNFXXXXXXXXX 480
RD ++M HA++ Y+ A+ ++EL P+S G I RG M + +
Sbjct: 169 RDFVKKMMKHAWNGYVTYAWGSNELRPISHTGHSASIF-GRGSMGATVVD-------ALS 220
Query: 481 XXXXMGDFSDLIMQSNSL*KMSLLTKILVVSVFETNIRMLGGLLSAHVLA 630
MG + + + + +SVFE IR LGGLLSA+ L+
Sbjct: 221 TLKLMGMNEEFERGRKWVAQNLNFNQASDISVFEMTIRFLGGLLSAYALS 270
>SB_43428| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0)
Length = 758
Score = 31.9 bits (69), Expect = 0.50
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Frame = +1
Query: 256 ETSGLRMSKAERLSLRDESR-QMFYHAYHAYMENAYPADELMPLSCK-GRWXGITPSRGD 429
+ +G+ + ++++ R ++ + F HA+ Y + A+ DEL P+S W I + D
Sbjct: 335 DINGVHLLPIDQVNSRQKAVIEAFRHAWKGYKQFAWGHDELKPISKSFSEWFNIGLTIID 394
Query: 430 MDDALGNFXXXXXXXXXXXXXMGDFSDLIMQSNSL*KMSLLTKILVVSVFETNIRMLGGL 609
D + + D + S S K + V++FE IR+LGGL
Sbjct: 395 SLDTM--------LLLNLKDEFREARDWVANSLSF------DKNVDVNLFEVTIRVLGGL 440
Query: 610 LSAHVLA 630
LSA+ L+
Sbjct: 441 LSAYHLS 447
>SB_55679| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 30.7 bits (66), Expect = 1.2
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Frame = -3
Query: 496 PSQLKCLSCPPMSMRNFLKHHPYLHDSV*FLXICPCN*EA-SVHQLDMHSPCK-----HD 335
P ++ +S PP++ + ++HP LH L P ++ SV L SP + H
Sbjct: 100 PYYIQSISVPPLTTSSPSQYHPLLHPV--HLSTIPYYIQSISVPSLTTSSPSQYHPLPHP 157
Query: 334 KHDRTSALIHLLSLVSPPLT 275
H RT+ L ++ S+ PPLT
Sbjct: 158 VHLRTT-LFYIQSISEPPLT 176
>SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 836
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Frame = -3
Query: 475 SCPPMSMRNFLKHHPYLHDS----V*FLXICPCN*EASVHQLDMHSPCKHDKHDRTSALI 308
S P S HHP+ H S + + P + S Q + H P H H + +
Sbjct: 312 SPPSTSSSQRHHHHPHHHHSAITTIHIIITAPSSPSISSSQRNHHHPHHHSHHSAITNIH 371
Query: 307 HLLSLVSPPLT 275
++++ SPP T
Sbjct: 372 IIITVPSPPST 382
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Frame = -3
Query: 475 SCPPMSMRNFLKHHPYLHDS----V*FLXICPCN*EASVHQLDMHSPCKHDKHDRTSALI 308
S P S HHP+ H S + + P + S Q + H P H H + +
Sbjct: 150 SPPSTSSSQRHHHHPHHHHSAITTIHIIITAPSSPSISSSQRNHHHPHHHSHHSAITNIH 209
Query: 307 HLLSLVSPPLT 275
+++ SPP T
Sbjct: 210 IIITAPSPPST 220
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Frame = -3
Query: 475 SCPPMSMRNFLKHHPYLHDS----V*FLXICPCN*EASVHQLDMHSPCKHDKHDRTSALI 308
S P S HHP+ H S + + P + S Q H P H H + +
Sbjct: 378 SPPSTSSSQRHHHHPHHHHSAITTIHIIITAPSSPSISSSQRHHHHPHHHSHHSAITNIH 437
Query: 307 HLLSLVSPPLT 275
+++ SPP T
Sbjct: 438 IIITAPSPPST 448
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/77 (24%), Positives = 34/77 (44%)
Frame = +3
Query: 342 LHGECISS**TDASQLQGQMXRNYTESWRYG*CFRKFLIDIGGQLRHFSCDGGLFGFNHA 521
++G+ I + + G YT S G ++K +I +G + G N+
Sbjct: 39 MYGQGIGTLSFKVKKPDGTYDVQYTLSGNQGNSWKKAVIGLGSYKKFVIIIEATRGANYQ 98
Query: 522 IQLVIKDVSFDQDIGCF 572
+ + D+SFD+D CF
Sbjct: 99 GDIAVDDISFDKD--CF 113
>SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89)
Length = 1354
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +3
Query: 81 NRCIHFIKVIFLNFLFIRKPFQ*FEFILN*KVFLVCILQWLSPFY**CSL 230
+ C +K +++N + + + + N K + C+ WL+P Y C L
Sbjct: 317 SNCYTTVKCLYMNSRSVARNRSELQALSNGKDLIFCVESWLNPNYLDCEL 366
>SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27)
Length = 228
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 512 KSEKSPITTKVSKLSTNVNEKFPKASSISPRLG 414
K KSP TTK + +T K PK S S + G
Sbjct: 168 KDAKSPTTTKKTSKTTKTAAKSPKKSEKSSKAG 200
>SB_20760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 230
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -3
Query: 676 HXYTIXIMEYRSSTFPPIREQTIDPPAS*YLFQRLKQPISWSKETSFITSW 524
H YT Y ++ PIR T+ P S + + PISWSK +W
Sbjct: 127 HNYT----RYVTTQLHPIRHDTVTPDTSRHNYT----PISWSKHNYTTITW 169
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,797,000
Number of Sequences: 59808
Number of extensions: 427050
Number of successful extensions: 820
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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