Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060654.seq
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47073-1|CAA87371.3|  931|Caenorhabditis elegans Hypothetical pr...   120   1e-27
Z68882-3|CAA93106.2|  568|Caenorhabditis elegans Hypothetical pr...    72   4e-13
Z81497-2|CAB04078.1|  781|Caenorhabditis elegans Hypothetical pr...    70   1e-12
Z78012-5|CAB01415.1|  590|Caenorhabditis elegans Hypothetical pr...    36   0.027
Z73906-1|CAA98114.1|  540|Caenorhabditis elegans Hypothetical pr...    32   0.33 
Z68270-2|CAA92567.1|  532|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z81049-4|CAJ76935.1|  496|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z81049-3|CAB02846.2|  631|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U13875-8|AAN63443.1|  633|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U13875-7|AAN63444.1|  635|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AL110482-5|CAB60338.2|  704|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z47073-1|CAA87371.3|  931|Caenorhabditis elegans Hypothetical
           protein ZC506.1 protein.
          Length = 931

 Score =  120 bits (289), Expect = 1e-27
 Identities = 64/131 (48%), Positives = 79/131 (60%), Gaps = 3/131 (2%)
 Frame = +1

Query: 271 RMSKAERLS---LRDESRQMFYHAYHAYMENAYPADELMPLSCKGRWXGITPSRGDMDDA 441
           R+S  E L    L+ E+  MF H Y++YM  A+PADELMPLSCKGR  G+TPSRGD+DD 
Sbjct: 17  RISHGEELDKKKLQKEAYDMFMHGYNSYMNYAFPADELMPLSCKGRIRGVTPSRGDVDDV 76

Query: 442 LGNFXXXXXXXXXXXXXMGDFSDLIMQSNSL*KMSLLTKILVVSVFETNIRMLGGLLSAH 621
           LGNF             M +  +     + + K        VVSVFETNIR+LGGL+SAH
Sbjct: 77  LGNFSVTLLDSLDTLVVMNELDEFEKAIDLVIKHVRFDSDHVVSVFETNIRVLGGLISAH 136

Query: 622 VLAETLKSDIP 654
           VLAE +K   P
Sbjct: 137 VLAELVKEKYP 147


>Z68882-3|CAA93106.2|  568|Caenorhabditis elegans Hypothetical
           protein C47E12.3 protein.
          Length = 568

 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
 Frame = +1

Query: 307 ESRQMFYHAYHAYMENAYPADELMPLSCKGRWXG-ITPSRGDMDDALGNFXXXXXXXXXX 483
           ++R+MF   +  YME+A+PADEL P+ C+GR      P   +++D LG++          
Sbjct: 50  KTREMFQFGWDNYMEHAFPADELDPIHCRGRGHDHDNPDNINVNDVLGDYSLGLIDTLDS 109

Query: 484 XXXMGDFSDLIMQSNSL*KMSLLTKILVVSVFETNIRMLGGLLSAHVLA 630
               GD  +     N + K     K   V VFE+ IR++GGLL+AH++A
Sbjct: 110 LVVFGDADEFKRAVNLVIKTVSFEKNTTVQVFESTIRVMGGLLAAHMIA 158


>Z81497-2|CAB04078.1|  781|Caenorhabditis elegans Hypothetical
           protein F10C2.5 protein.
          Length = 781

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 41/123 (33%), Positives = 69/123 (56%)
 Frame = +1

Query: 262 SGLRMSKAERLSLRDESRQMFYHAYHAYMENAYPADELMPLSCKGRWXGITPSRGDMDDA 441
           S +R + +   S R++ ++MFYHAY+ Y+++A+P DEL P++C G+            D 
Sbjct: 30  SSIRFTPSVIDSYREKVQKMFYHAYNGYLDHAFPLDELKPITCVGQ------------DT 77

Query: 442 LGNFXXXXXXXXXXXXXMGDFSDLIMQSNSL*KMSLLTKILVVSVFETNIRMLGGLLSAH 621
            G+F             MG+ ++     + + + +     + VSVFETNIR++GGL+SAH
Sbjct: 78  WGSFSLSLIDALDTLLVMGNTTEFRRAVSLVLEKARDDANVNVSVFETNIRVVGGLISAH 137

Query: 622 VLA 630
           +LA
Sbjct: 138 MLA 140


>Z78012-5|CAB01415.1|  590|Caenorhabditis elegans Hypothetical
           protein C52E4.5 protein.
          Length = 590

 Score = 35.9 bits (79), Expect = 0.027
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 2/113 (1%)
 Frame = +1

Query: 301 RDESRQMFYHAYHAYMENAYPADELMPLSCKGRWXGITPSRGDMDDALGNFXXXXXXXXX 480
           R + ++M  HA+  Y   ++ A+EL P+S K     I           G+          
Sbjct: 140 RQKVKEMMIHAWEGYKNYSWGANELRPMSKKPNSQNIFG---------GSQMPATIVDAA 190

Query: 481 XXXXMGDFSDLIMQSNSL*K--MSLLTKILVVSVFETNIRMLGGLLSAHVLAE 633
               + D  D   ++    +   S+      +SVFET IR LGGLLS + L +
Sbjct: 191 DTLFIMDLKDKYKEARDYIENNFSMAKSTSTLSVFETTIRFLGGLLSLYALTQ 243


>Z73906-1|CAA98114.1|  540|Caenorhabditis elegans Hypothetical
           protein D2030.1 protein.
          Length = 540

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 15/20 (75%), Positives = 16/20 (80%)
 Frame = +1

Query: 568 VSVFETNIRMLGGLLSAHVL 627
           +SVFETNIR  GGLLSA  L
Sbjct: 172 LSVFETNIRFTGGLLSAFAL 191


>Z68270-2|CAA92567.1|  532|Caenorhabditis elegans Hypothetical
           protein ZC410.3 protein.
          Length = 532

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = +1

Query: 568 VSVFETNIRMLGGLLSAHVL 627
           V+VFET IR+LGGLLS + L
Sbjct: 159 VNVFETTIRVLGGLLSGYHL 178


>Z81049-4|CAJ76935.1|  496|Caenorhabditis elegans Hypothetical
           protein C48D1.1b protein.
          Length = 496

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 581 SKTETTNILVKRDIFYNELDCMIKSEKSPITTKVSKLSTNVN 456
           S    TN +++  I    L CM K E + ITTK  +L TN++
Sbjct: 381 SSKACTN-MIQAGIISISLSCMEKVESNDITTKCLELLTNLS 421


>Z81049-3|CAB02846.2|  631|Caenorhabditis elegans Hypothetical
           protein C48D1.1a protein.
          Length = 631

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 581 SKTETTNILVKRDIFYNELDCMIKSEKSPITTKVSKLSTNVN 456
           S    TN +++  I    L CM K E + ITTK  +L TN++
Sbjct: 516 SSKACTN-MIQAGIISISLSCMEKVESNDITTKCLELLTNLS 556


>U13875-8|AAN63443.1|  633|Caenorhabditis elegans Hypothetical
           protein C26E6.7a protein.
          Length = 633

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 118 LRKITFIKWIHLFPKH*HFIENKSVVTILNY 26
           L+ I  I W+  F KH  F+E+ S +TI N+
Sbjct: 236 LKSIQEILWLLHFQKHDDFLESTSRLTIKNF 266


>U13875-7|AAN63444.1|  635|Caenorhabditis elegans Hypothetical
           protein C26E6.7b protein.
          Length = 635

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 118 LRKITFIKWIHLFPKH*HFIENKSVVTILNY 26
           L+ I  I W+  F KH  F+E+ S +TI N+
Sbjct: 238 LKSIQEILWLLHFQKHDDFLESTSRLTIKNF 268


>AL110482-5|CAB60338.2|  704|Caenorhabditis elegans Hypothetical
           protein Y39G8B.5 protein.
          Length = 704

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -2

Query: 614 DNRPPSILIFVSKTETTNI--LVKRDIFYNELDCMIKSEKSPITTK 483
           D  P  + + + +T    +  L+KR+I +NEL+CM  ++   I  K
Sbjct: 376 DGLPDDLYLVLPQTSQVEMRTLLKRNIKFNELECMTDTKLIEIRIK 421


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,858,681
Number of Sequences: 27780
Number of extensions: 338860
Number of successful extensions: 713
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)