Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060654.seq
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    24   1.2  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   3.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   3.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   3.6  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -3

Query: 283 PLTYVILKFPF-GFNQNDRNEHY 218
           P TY++LK+P  GF+   R + +
Sbjct: 630 PTTYILLKYPISGFDLEPRQKEF 652


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 370 HQLDMHSPCKHDKHDRTSALIHLLSLVSPP 281
           H  +  +    D ++R S   HL+ L SPP
Sbjct: 33  HSAESSASNSPDHYERFSPSTHLMDLSSPP 62



 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +1

Query: 271 RMSKAERLSLRDESRQMFYHAYHAYMENAYPADE 372
           ++SK + L L        +   H  MEN   AD+
Sbjct: 287 KLSKIQTLKLATRYIDFLFQVLHCNMENTEGADD 320


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 563 NILVKRDIFYNELDCMIKSEKSPITTKVSKL 471
           N+  K ++FYN  +  IKS  +    KVS L
Sbjct: 522 NVPKKLNMFYNNFNSDIKSISNNEQVKVSAL 552


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 563 NILVKRDIFYNELDCMIKSEKSPITTKVSKL 471
           N+  K ++FYN  +  IKS  +    KVS L
Sbjct: 522 NVPKKLNMFYNNFNSDIKSISNNEQVKVSAL 552


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -2

Query: 554 VKRDIFYNELDCMIKSEKSPITTKVSKL 471
           VKR++  + +  M+   K+P+T  ++KL
Sbjct: 498 VKRELGNDTVIVMMNFSKNPVTVNLTKL 525


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,877
Number of Sequences: 438
Number of extensions: 4212
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)