Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060651.seq
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0924 - 22660615-22660623,22661035-22661193,22661664-226625...    31   1.1  
05_02_0028 - 5764980-5766374                                           30   1.5  
09_02_0068 - 3832858-3833228,3835773-3836223                           29   2.6  
03_03_0025 + 13848450-13849420,13850921-13851131,13851327-138514...    29   4.6  
02_05_0046 - 25398412-25398594,25399022-25399060,25399896-254003...    28   6.0  
09_02_0283 + 6819086-6820270                                           28   8.0  
01_02_0077 + 10889048-10889082,10890243-10890605,10890680-10891619     28   8.0  

>08_02_0924 -
           22660615-22660623,22661035-22661193,22661664-22662539,
           22663009-22663119,22663528-22663556,22663690-22663762,
           22664804-22665100,22665193-22665345,22665979-22666068,
           22667520-22667809,22667860-22668349
          Length = 858

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = -3

Query: 295 LAAPPRGHGAVRPCPGPHSLTSGRAGQWASFS 200
           LAAPPR  G   P P P  LT GR   +A+FS
Sbjct: 635 LAAPPRREGG--PIPLPCFLTVGRGDPYAAFS 664


>05_02_0028 - 5764980-5766374
          Length = 464

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -3

Query: 337 YMSVNLRATSTTAVLAAPPRGHGAVRPCPGPHSLTSGRAGQWA 209
           Y++ ++ ++S T+ L +PPR   +  P   P +  + R G WA
Sbjct: 286 YLTKSIMSSSPTSTLVSPPRSPPSESPPLSPDAAGALRRGAWA 328


>09_02_0068 - 3832858-3833228,3835773-3836223
          Length = 273

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = +3

Query: 258 GRTAPWPRGGAASTAVVLVARR 323
           GR+AP P+GGAA +AVV+V  R
Sbjct: 166 GRSAP-PKGGAAGSAVVIVIMR 186


>03_03_0025 +
           13848450-13849420,13850921-13851131,13851327-13851459,
           13851576-13851832
          Length = 523

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 22/72 (30%), Positives = 36/72 (50%)
 Frame = -3

Query: 421 APLPPRSYTQRLLRKS*QFQYNIPYDTDYMSVNLRATSTTAVLAAPPRGHGAVRPCPGPH 242
           AP PP S    LLR+      ++P D D ++ + R  S+++  +A      + R    P 
Sbjct: 142 APPPPPSPEVELLRRRRHVSISLPDDDDEIAPHHRRNSSSSSSSA------SARLVTRPA 195

Query: 241 SLTSGRAGQWAS 206
           + TSG +G+W S
Sbjct: 196 AATSG-SGRWRS 206


>02_05_0046 -
           25398412-25398594,25399022-25399060,25399896-25400360,
           25400758-25400816,25400920-25401748,25402554-25402898,
           25402973-25403435,25403537-25403640,25403692-25403901,
           25404933-25405088,25405774-25406052,25406237-25406986,
           25407141-25407232,25407977-25408361,25408672-25408752,
           25409196-25409354,25409399-25409506,25409604-25409666,
           25409764-25409835,25409932-25410366
          Length = 1758

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -2

Query: 470 NNRVGSGSRAWRCVVHRTTTAPILHTTAPK---KELTISI*YTI*YRLHV 330
           N R+  G RAWR V+HR   A ++     K   KEL I   + I Y +H+
Sbjct: 157 NYRMTYGHRAWRNVLHRLRDAQLIEEFDAKVDDKELEIRKDFII-YHVHM 205


>09_02_0283 + 6819086-6820270
          Length = 394

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 319 RATSTTAVLAAPPRGHGAVRPCPGPHS 239
           R+ +  AV  APP  HGA  P P PHS
Sbjct: 69  RSGAWLAVPTAPPARHGATSP-PQPHS 94


>01_02_0077 + 10889048-10889082,10890243-10890605,10890680-10891619
          Length = 445

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
 Frame = -2

Query: 506 ILFRNRKLRFGNNNRVGSGSR----AWRCV--VHRTTTAPILHTTAPKKEL 372
           ILF NR+ R   NN+ G   R    AW  +   H TT   +   TA K+E+
Sbjct: 114 ILFSNRRRRLYTNNKSGDSFRYDYKAWSYIDFDHPTTFDTLAMDTARKREI 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,015,131
Number of Sequences: 37544
Number of extensions: 281429
Number of successful extensions: 763
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)