Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060651.seq
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.66 
SB_56828| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_19664| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)                   28   8.1  

>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3293

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
 Frame = -3

Query: 523 NYVKATFYFGTESYDLETTTESXRGRARGA----AWYIAPLPPRSYTQRLLRKS*QFQYN 356
           N+ ++  + G  SY +   T + +G  + A    + + APLPP  ++   L ++   + +
Sbjct: 299 NFSRSKSFSGRPSYGVMVAT-TMKGEGKSAHPEISTFQAPLPPDRFSSSDLLRNKPARKS 357

Query: 355 IPYDTDYMSVNLRATSTTAVLAAPPRG 275
           +P +  + + +L A    A ++A PRG
Sbjct: 358 LPANEFWKTASLPAGGNRARVSADPRG 384


>SB_56828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 525

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 501 ISEQKVTIWKQQQSRXGVARVALRGTSHHYRPD 403
           I E  VTI+KQ++    VA V +RG++ +   D
Sbjct: 209 IGETPVTIFKQEREETAVATVVIRGSTENIMDD 241


>SB_19664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 632

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 346 DTDYMSVNLRATSTTA--VLAAPPRGHGAVRPCPGPHSLTS 230
           D DY+     +TS+T     + P +G   +RP PG H+LT+
Sbjct: 485 DMDYIPTKDTSTSSTGNQCSSVPTKGTKPMRPPPGFHALTT 525


>SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)
          Length = 2111

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 580 LSTYTYNTPHLFK*SSTVVNYVKATFYFGTESYDLETTTESXRGRARGAAWYI 422
           L T+    P L   S T  +YV  +FYFG  + ++ T T   +  +    +YI
Sbjct: 791 LDTFPLEYPILIGTSITDGSYVTYSFYFGDGTQNVTTDTSIKKKFSERGTYYI 843


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,360,746
Number of Sequences: 59808
Number of extensions: 316762
Number of successful extensions: 665
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)