Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060651.seq
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p...    29   4.1  
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like...    29   4.1  
AL132860-26|CAB60511.2|  700|Caenorhabditis elegans Hypothetical...    28   7.2  

>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical
           protein F15B9.7 protein.
          Length = 2577

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 10  RFVINLYIADLNERPF*DTHSSRRTV*RHSPV 105
           R V+N++I D+N  P+ + H     +  HSP+
Sbjct: 666 RCVVNVFIDDVNSAPYFNDHPFSVKIPEHSPI 697


>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
           protein F15B9.7 protein.
          Length = 2577

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 10  RFVINLYIADLNERPF*DTHSSRRTV*RHSPV 105
           R V+N++I D+N  P+ + H     +  HSP+
Sbjct: 666 RCVVNVFIDDVNSAPYFNDHPFSVKIPEHSPI 697


>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
           protein FMI-1 protein.
          Length = 2596

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 10  RFVINLYIADLNERPF*DTHSSRRTV*RHSPV 105
           R V+N++I D+N  P+ + H     +  HSP+
Sbjct: 666 RCVVNVFIDDVNSAPYFNDHPFSVKIPEHSPI 697


>AL132860-26|CAB60511.2|  700|Caenorhabditis elegans Hypothetical
           protein Y56A3A.32 protein.
          Length = 700

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -1

Query: 480 IWKQQQSRXGVA--RVALRGTSHHYRPDPTH 394
           I++QQ +   +A  RVAL G  HH+ P P +
Sbjct: 14  IFRQQTAVRSIAMSRVALGGGGHHHEPTPVY 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,325,477
Number of Sequences: 27780
Number of extensions: 234469
Number of successful extensions: 517
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)