Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060651.seq
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   4.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.3  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 654 RGQGPAEVXRYCALSELRSG 595
           R + P      CAL+EL+SG
Sbjct: 28  RNKNPQPKNAVCALNELKSG 47


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/41 (21%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +1

Query: 334 CNLYHMVYYIEIVNSFLGAVVCR--IGAVVVRCTTQRHARD 450
           CN++ +   +  VNSFL  +  +   G +   C  + ++++
Sbjct: 5   CNIWTLAVNVLFVNSFLFVIAAQDSSGRIFTICVPEIYSKE 45


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/41 (21%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +1

Query: 334 CNLYHMVYYIEIVNSFLGAVVCR--IGAVVVRCTTQRHARD 450
           CN++ +   +  VNSFL  +  +   G +   C  + ++++
Sbjct: 5   CNIWTLAVNVLFVNSFLFVIAAQDSSGRIFTICVPEIYSKE 45


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/41 (21%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +1

Query: 334 CNLYHMVYYIEIVNSFLGAVVCR--IGAVVVRCTTQRHARD 450
           CN++ +   +  VNSFL  +  +   G +   C  + ++++
Sbjct: 5   CNIWTLAVNVLFVNSFLFVIAAQDSSGRIFTICVPEIYSKE 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,801
Number of Sequences: 438
Number of extensions: 2874
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)