Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060650.seq
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    28   1.5  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    28   1.5  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   1.9  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   3.4  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    27   3.4  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    26   5.9  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    25   7.8  

>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +1

Query: 397 RLYNNLEPNSPLRYHVYYHVIELAARV 477
           RLY+ +   + +R++V Y+V+E+A R+
Sbjct: 246 RLYHIIRAQASIRFYVLYNVLEIADRL 272


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1098

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 540  PSNEQMQKLYRLLHQVLKDQNSELAAKVMIELLG 641
            P  +++Q+ YR  H+VL+   ++ +  V  +LLG
Sbjct: 1027 PGKQRVQRTYRRTHEVLEPVGAKTSETVFNDLLG 1060


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +3

Query: 525  FANCPPSNEQMQKLYRLLHQVLKDQNSELAAKVMIELLGTYTDENASYAREDAI 686
            +A   PS       ++L   +L D ++ +  +++  L+GT +DE  SY R+ ++
Sbjct: 1579 WATTCPSRRLACNSFQLFRSLLPDFDARMLLEIISRLVGTISDE-TSYLRDYSV 1631


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 258 FVSDSLGSLKQASQTPTILCRSSSMPLGDFSSEISAP 148
           F SDS G L   S + T  C    +P G  +  ++ P
Sbjct: 375 FTSDSTGPLATTSYSYTKTCTQQFLPFGQGNGGVNGP 411


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 258 FVSDSLGSLKQASQTPTILCRSSSMPLGDFSSEISAP 148
           F SDS G L   S + T  C    +P G  +  ++ P
Sbjct: 375 FTSDSTGPLATTSYSYTKTCTQQFLPFGQGNGGVNGP 411


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 329 AKIRFSPLSNGIETIIETILFRMASYPIHS-AL*NKHH 219
           A   F+   +GI  I+ TIL  +A+Y I++  L N HH
Sbjct: 207 ASFYFATGLHGIHIIVGTILLLVATYNIYTYHLTNTHH 244


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 50  QFEKGIKMQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSPKGIEDD 196
           +  +GIK +G ++  +I+ +DQA     YF S   E  E  +    E D
Sbjct: 461 RISEGIKEEGISLSEEITDKDQAFASMGYFDSYNFEGVENSNSLNNEGD 509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,668,055
Number of Sequences: 5004
Number of extensions: 52201
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)