Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060650.seq
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55495| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0)             30   2.0  
SB_40313| Best HMM Match : Glyco_hydro_38 (HMM E-Value=0)              30   2.0  
SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_59428| Best HMM Match : Ank (HMM E-Value=2.2)                       28   8.1  
SB_21430| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_55495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 858

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 18/48 (37%), Positives = 31/48 (64%)
 Frame = +2

Query: 113 QALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFKEPSESDT 256
           +A E+R + K  GA++ EE S   ++D+L +I+  C  CFKE +E ++
Sbjct: 49  KAQEIRTFLKEQGADLKEE-SITPLQDELAEILECCQVCFKEDAELES 95


>SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0)
          Length = 965

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 564 LYRLLHQVLKDQNSELAAKVMIELLGTYTDENASYARE 677
           L RL HQ   D++S+L+  V + L G +TD   S   E
Sbjct: 839 LIRLEHQFEADEDSKLSMPVNVSLQGLFTDLEVSKVEE 876


>SB_40313| Best HMM Match : Glyco_hydro_38 (HMM E-Value=0)
          Length = 887

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 564 LYRLLHQVLKDQNSELAAKVMIELLGTYTDENASYARE 677
           L RL HQ   D++S+L+  V + L G +TD   S   E
Sbjct: 827 LIRLEHQFEADEDSKLSMPVNVSLQGLFTDLEVSKVEE 864


>SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 447 LSCHRTGCTSWICQGSLHWSWQLRKEFANCPP 542
           L  HR  C +    G+ +W W+L  ++ N  P
Sbjct: 298 LQAHRRACLACYYYGNGYWDWELDNQYDNDNP 329


>SB_59428| Best HMM Match : Ank (HMM E-Value=2.2)
          Length = 351

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 418 PNSPLRYHVYYHVIE 462
           P+ PL YH +YHVI+
Sbjct: 288 PDDPLDYHFFYHVID 302


>SB_21430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 815

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +3

Query: 522 EFANCPPSNEQMQKLYRLLHQVLKDQNSELAAK---VMIELLGTYTDEN 659
           EF    P  E    + RLL Q+  DQ+SELA +   +    LG Y D N
Sbjct: 294 EFKLKSPDVEDRLAVTRLLSQMFSDQSSELAIQNKSLWQSYLGRYLDIN 342


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,545,546
Number of Sequences: 59808
Number of extensions: 368884
Number of successful extensions: 1051
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)