Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060650.seq
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70855-1|AAB09161.1|  390|Caenorhabditis elegans Hypothetical pr...    45   6e-05
U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis...    29   2.4  
U41109-12|AAB37043.1|  451|Caenorhabditis elegans Hypothetical p...    29   2.4  
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p...    28   7.2  
Z69717-2|CAA93532.2|  204|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AC006804-1|AAF60755.1|  340|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U70855-1|AAB09161.1|  390|Caenorhabditis elegans Hypothetical
           protein K08F11.3 protein.
          Length = 390

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 22/47 (46%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
 Frame = +3

Query: 549 EQMQKLYRLLHQ-VLKDQNSELAAKVMIELLGTYTDENASYAREDAI 686
           E  +++ R +H+ +L DQ  + AAKVM  LLGTYT+++A+ AR+DA+
Sbjct: 167 EGQREILRAVHRALLVDQRVDQAAKVMTALLGTYTEKDAAAARDDAM 213


>U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis
            transmembrane conductanceregulator homolog protein 1
            protein.
          Length = 1247

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 95   DISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFK 235
            DI L  +A +LR Y KSL   + +  SP+ + ++    V VC A  K
Sbjct: 1117 DIWLAIEACQLREYVKSLPDGLHQMVSPEKMSNEQKCQVNVCRALLK 1163


>U41109-12|AAB37043.1|  451|Caenorhabditis elegans Hypothetical
           protein F52E1.10 protein.
          Length = 451

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
 Frame = +3

Query: 390 VMETLQQLRTQLPSKIPCILSCHRTGCTSWICQGSLHWSWQLRKEF---ANCPPSNEQMQ 560
           ++E +  L+T+L   +  + S       + + QGSLHWS   + E     N    N+  Q
Sbjct: 311 LVEDMVYLQTELKKVVQVLTSFDEY--ENELRQGSLHWSPAHKCEVFWNENAHRLNDNRQ 368

Query: 561 KLYRLLHQVLKDQNSELAAKVMIELLGTY 647
           +L +LL  +L+  N  L   V    +G +
Sbjct: 369 ELLKLLVAMLEKSNDPLVLCVAAHDIGEF 397


>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
            F18C12.2b protein.
          Length = 2271

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 116  ALELRRYFKSLGAEISEEKSPKGIEDDLHKI 208
            A++L  Y K   AE++    PK I DDL +I
Sbjct: 1726 AIDLLDYIKKHSAELTGAPKPKAISDDLIEI 1756


>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
            F18C12.2a protein.
          Length = 2279

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 116  ALELRRYFKSLGAEISEEKSPKGIEDDLHKI 208
            A++L  Y K   AE++    PK I DDL +I
Sbjct: 1726 AIDLLDYIKKHSAELTGAPKPKAISDDLIEI 1756


>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
            protein RME-8 protein.
          Length = 2279

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 116  ALELRRYFKSLGAEISEEKSPKGIEDDLHKI 208
            A++L  Y K   AE++    PK I DDL +I
Sbjct: 1726 AIDLLDYIKKHSAELTGAPKPKAISDDLIEI 1756


>Z69717-2|CAA93532.2|  204|Caenorhabditis elegans Hypothetical
           protein E01G6.2 protein.
          Length = 204

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 38  NKRIQFEKGIKMQGPAVFMDISLEDQALELRRYFKSLGAE 157
           NK+ +  K  K  G ++ MD+ LED+A  L    ++ G E
Sbjct: 62  NKKTKVSKNGKDFGKSMSMDVLLEDEAAALVEALETFGDE 101


>AC006804-1|AAF60755.1|  340|Caenorhabditis elegans Hypothetical
           protein Y53G8B.2 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +1

Query: 439 HVYYHVIELAARVGFVRE-VFTG 504
           H  YH + LA+R GFVRE + TG
Sbjct: 201 HPGYHTLTLASRKGFVREALITG 223


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,527,480
Number of Sequences: 27780
Number of extensions: 284079
Number of successful extensions: 974
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)