Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060650.seq
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    26   0.39 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.7  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.8  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.8  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.8  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.8  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.8  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.8  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   6.3  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 456 HRTGCTSWICQGSLHWSW 509
           HR     W+ QG+  WSW
Sbjct: 165 HRKDYERWVQQGAFGWSW 182


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 71  MQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSP 178
           +Q P ++   SL D+A +  + F++L  + S E  P
Sbjct: 625 LQAPPLYDTNSLMDEAYKPHKKFRALRQKDSAEAEP 660


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/46 (21%), Positives = 21/46 (45%)
 Frame = -1

Query: 294 RNHNRDNTVQNGFVSDSLGSLKQASQTPTILCRSSSMPLGDFSSEI 157
           R+ N      +G++  + G+     +  T+   S+S+PL     E+
Sbjct: 353 RHKNSAANPPSGYIRSAFGTPISTGRPATVEDTSASLPLSGMQEEL 398


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/46 (21%), Positives = 21/46 (45%)
 Frame = -1

Query: 294 RNHNRDNTVQNGFVSDSLGSLKQASQTPTILCRSSSMPLGDFSSEI 157
           R+ N      +G++  + G+     +  T+   S+S+PL     E+
Sbjct: 353 RHKNSAANPPSGYIRSAFGTPISTGRPATVEDTSASLPLSGMQEEL 398


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/46 (21%), Positives = 21/46 (45%)
 Frame = -1

Query: 294 RNHNRDNTVQNGFVSDSLGSLKQASQTPTILCRSSSMPLGDFSSEI 157
           R+ N      +G++  + G+     +  T+   S+S+PL     E+
Sbjct: 353 RHKNSAANPPSGYIRSAFGTPISTGRPATVEDTSASLPLSGMQEEL 398


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/46 (21%), Positives = 21/46 (45%)
 Frame = -1

Query: 294 RNHNRDNTVQNGFVSDSLGSLKQASQTPTILCRSSSMPLGDFSSEI 157
           R+ N      +G++  + G+     +  T+   S+S+PL     E+
Sbjct: 353 RHKNSAANPPSGYIRSAFGTPISTGRPATVEDTSASLPLSGMQEEL 398


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/46 (21%), Positives = 21/46 (45%)
 Frame = -1

Query: 294 RNHNRDNTVQNGFVSDSLGSLKQASQTPTILCRSSSMPLGDFSSEI 157
           R+ N      +G++  + G+     +  T+   S+S+PL     E+
Sbjct: 353 RHKNSAANPPSGYIRSAFGTPISTGRPATVEDTSASLPLSGMQEEL 398


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/46 (21%), Positives = 21/46 (45%)
 Frame = -1

Query: 294 RNHNRDNTVQNGFVSDSLGSLKQASQTPTILCRSSSMPLGDFSSEI 157
           R+ N      +G++  + G+     +  T+   S+S+PL     E+
Sbjct: 353 RHKNSAANPPSGYIRSAFGTPISTGRPATVEDTSASLPLSGMQEEL 398


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/46 (21%), Positives = 21/46 (45%)
 Frame = -1

Query: 294 RNHNRDNTVQNGFVSDSLGSLKQASQTPTILCRSSSMPLGDFSSEI 157
           R+ N      +G++  + G+     +  T+   S+S+PL     E+
Sbjct: 421 RHKNSAANPPSGYIRSAFGTPISTGRPATVEDTSASLPLSGMQEEL 466


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/46 (21%), Positives = 21/46 (45%)
 Frame = -1

Query: 294 RNHNRDNTVQNGFVSDSLGSLKQASQTPTILCRSSSMPLGDFSSEI 157
           R+ N      +G++  + G+     +  T+   S+S+PL     E+
Sbjct: 421 RHKNSAANPPSGYIRSAFGTPISTGRPATVEDTSASLPLSGMQEEL 466


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 390 RLQSYHSKFRARSLSEPLTKC*DKVFSSF*WYRNH 286
           RL+ +      R   EP+     +V+SS    RNH
Sbjct: 17  RLRRHIQNVHTRPSKEPICNICKRVYSSLNSLRNH 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,195
Number of Sequences: 438
Number of extensions: 3142
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)