Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060650.seq
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B li...    30   1.7  
At2g45350.1 68415.m05643 pentatricopeptide (PPR) repeat-containi...    29   2.9  
At1g76850.1 68414.m08943 expressed protein                             29   2.9  
At5g07280.1 68418.m00830 leucine-rich repeat protein kinase, put...    28   6.7  
At4g33070.1 68417.m04711 pyruvate decarboxylase, putative strong...    28   6.7  

>At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B
           light-insensitive protein, putative similar to ULI3
           (UV-B light insensitive) [Arabidopsis thaliana]
           GI:17225050; contains Pfam profile PF03107: DC1 domain
          Length = 656

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +3

Query: 72  CKGQLCLW--TYPWKIRHSN*EDIL 140
           C   LCLW  + P KIRHSN E IL
Sbjct: 519 CDFNLCLWCASLPKKIRHSNDEHIL 543


>At2g45350.1 68415.m05643 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 606

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +1

Query: 454 VIELAARVGFVREVFTGVGSLGKSLLTAHLLMNKCRNCIGFYIKC 588
           V++  +R+GFV+      G L K+ L + L +  C   IG Y+KC
Sbjct: 120 VLKACSRLGFVKGGMQIHGFLKKTGLWSDLFLQNC--LIGLYLKC 162


>At1g76850.1 68414.m08943 expressed protein
          Length = 1090

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +1

Query: 265 LNSIVSIMVSIPLERGENLILAFSQRLTKA-PGPKLGMVALQSLWRLYNNLEPNSPLRYH 441
           L S V+I+  + LE  E ++L F   L K+   PK+   +L++  RL   LEP S   +H
Sbjct: 380 LPSHVNILKRV-LEEVEKVMLEFKGTLYKSMEDPKIDFTSLENTVRLLLELEPESDPVWH 438


>At5g07280.1 68418.m00830 leucine-rich repeat protein kinase,
           putative / extra sporogenous cells (ESP) identical to
           extra sporogenous cells [Arabidopsis thaliana]
           gi|23304947|emb|CAD42912; contains Pfam domains PF00560:
           Leucine Rich Repeat and PF00069: Protein kinase domain
          Length = 1192

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
 Frame = +1

Query: 295 IPLERGE-----NLILAFSQRLTKAPGPKLGMVALQSLWRLYNNLEPNSPLRYHVYYHVI 459
           IP+E G+      L L  +    + P     +  LQ L   YNNL  + P +   Y+H I
Sbjct: 512 IPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQI 571

Query: 460 EL 465
           E+
Sbjct: 572 EM 573


>At4g33070.1 68417.m04711 pyruvate decarboxylase, putative strong
           similarity to SP|P51846 Pyruvate decarboxylase isozyme 2
           (EC 4.1.1.1) (PDC) {Nicotiana tabacum}; contains
           InterPro entry IPR000399: Pyruvate decarboxylase
          Length = 607

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = +1

Query: 262 ILNSIVSIMVSIPLERGENLILAFSQRLTKAPGPKLGMVALQSLWRLYNNLEPNSPLRYH 441
           I N   S+  S+ L++ E  I+    R+T A GP  G + +   +R  +     +   Y 
Sbjct: 330 IFNDYSSVGYSLLLKK-EKAIVVQPDRITVANGPTFGCILMSDFFRELSKRVKRNETAYE 388

Query: 442 VYYHV 456
            Y+ +
Sbjct: 389 NYHRI 393


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,782,682
Number of Sequences: 28952
Number of extensions: 270110
Number of successful extensions: 805
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)