Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060649.seq
(687 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 86 4e-18
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 47 3e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 44 2e-05
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 44 2e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 44 3e-05
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 43 4e-05
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 42 1e-04
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 41 1e-04
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 40 4e-04
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 39 8e-04
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 38 0.001
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 37 0.003
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 36 0.004
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 36 0.005
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 34 0.017
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 34 0.017
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 33 0.051
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 32 0.068
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 32 0.089
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 31 0.12
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 31 0.12
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 30 0.27
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 29 0.48
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 29 0.48
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 29 0.83
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 28 1.5
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 27 2.5
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 27 3.4
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 4.4
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 26 5.9
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 26 5.9
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 26 5.9
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 7.8
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 25 7.8
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 86.2 bits (204), Expect = 4e-18
Identities = 35/70 (50%), Positives = 54/70 (77%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 434
TTD SL++++EQ+GE++D VM+D T RS+GFGF+T+ V+E ++ H +DG+I+
Sbjct: 174 TTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM-SKEHHLDGKII 232
Query: 435 EPKRAVPREE 464
+PKRA+PREE
Sbjct: 233 DPKRAIPREE 242
Score = 57.6 bits (133), Expect = 2e-09
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPH-KIDGRIV 434
T+ + F+ Q+G ++D +M D T R +GFGF+TY V EA ++P+ I G+ V
Sbjct: 259 TEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAV-EATMSQPYITIHGKPV 317
Query: 435 EPKRAVPREEIK 470
E KRA P+ ++
Sbjct: 318 EVKRATPKASLR 329
Score = 50.8 bits (116), Expect = 2e-07
Identities = 20/60 (33%), Positives = 35/60 (58%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRVCLQ 676
K+ G+ D EE+ R +F+ FG ++ +++ DK+TG+ RG GFV ++ V+ Q
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Score = 48.0 bits (109), Expect = 1e-06
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRV 667
K+ GL + ++ LR+YF FG ++ +V+ D TG+ RG GF+ F V+ V
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 46.8 bits (106), Expect = 3e-06
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +2
Query: 530 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDR 664
++EDL FS FG I+S V+ DKETG F+EFD + V++
Sbjct: 256 QDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 44.4 bits (100), Expect = 2e-05
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +2
Query: 500 VVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFD 643
+ L D+ E+D+ FS FG V +++V DKETGK +G F++++
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYE 80
Score = 34.7 bits (76), Expect = 0.013
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +3
Query: 282 YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPH-KIDGRIV 434
+ ++GE VD+ +++D +T +SKGF F+ Y A +N + K+ R+V
Sbjct: 51 FSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLV 102
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 44.0 bits (99), Expect = 2e-05
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
L D EE+LR+ F FG I V + DKETG+ +G FV +
Sbjct: 209 LSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
Score = 36.3 bits (80), Expect = 0.004
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 368
T + L++ + ++G I V + KD +T R+KGF F++Y
Sbjct: 213 TREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 43.6 bits (98), Expect = 3e-05
Identities = 18/64 (28%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +3
Query: 261 DSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVE 437
+ L++ + ++G + V +M++P TK S+GFGF+++S A +N + GR++
Sbjct: 114 EDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLN 173
Query: 438 PKRA 449
++A
Sbjct: 174 VQKA 177
Score = 37.9 bits (84), Expect = 0.001
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +2
Query: 509 AGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
+G+ ++E++L++ FS FG + V ++ + T RG GF+ F
Sbjct: 106 SGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSF 149
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 43.2 bits (97), Expect = 4e-05
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRI 431
T L F+ G I VV+ +P+T ++G+GF+T+S A + K+ GRI
Sbjct: 16 TKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRI 75
Query: 432 VEPKRAVPRE 461
+ A PR+
Sbjct: 76 LRLDFATPRK 85
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +2
Query: 530 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDR 664
+++DL +FS G I VVT+ ETG+ RG GFV F + R
Sbjct: 17 KQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQR 61
Score = 32.3 bits (70), Expect = 0.068
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 368
T+ L + Q+G + ++KDP T RS G GFI +
Sbjct: 289 TEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKF 325
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/40 (45%), Positives = 27/40 (67%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFV 634
L+ ++++E L+ FS FG I S ++TD E GK +G GFV
Sbjct: 371 LQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFV 409
Score = 37.9 bits (84), Expect = 0.001
Identities = 20/51 (39%), Positives = 26/51 (50%)
Frame = +2
Query: 500 VVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYD 652
V L I+ + L + FS FG I+S V D E G +G GFV FD +
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVE 219
Score = 34.3 bits (75), Expect = 0.017
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +3
Query: 261 DSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVE 437
D LK + +G I +M D + K SKGFGF+ Y+ ++A + + G+ +
Sbjct: 377 DERLKAEFSAFGTITSAKIMTDEQGK-SKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLY 435
Query: 438 PKRAVPREEIKRPEASATVK 497
A R+E++R + A ++
Sbjct: 436 VALA-QRKEVRRSQLEAQIQ 454
Score = 33.5 bits (73), Expect = 0.029
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 395
T+ + + Q+GEI + ++KD K +GFGF+ Y+ +A
Sbjct: 273 TEQEFSDLFGQFGEITSLSLVKDQNDK-PRGFGFVNYANHECAQKA 317
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 41.1 bits (92), Expect = 1e-04
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +3
Query: 261 DSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVE 437
D L + +E++G IV V+ D ++ RSKG+G++ + A N +IDGR+V
Sbjct: 276 DQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVN 335
Query: 438 PKRAVPREEIKRPEA 482
+ PR +P A
Sbjct: 336 LDLSNPRPANPQPYA 350
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 500 VVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRVCLQ 676
V L + E+DL F G+I S+ + TD ++G+ +G G+V F D + C++
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK-CVE 425
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE 437
T+ L + G+I + + DP++ R KGFG++T+S + H I GR
Sbjct: 378 TEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCR 437
Query: 438 PKRAVPR 458
+ PR
Sbjct: 438 LDFSTPR 444
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 39.5 bits (88), Expect = 4e-04
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +2
Query: 533 EEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYD 652
+ DL+E+F G I V ++T ++TGK +G GFV+F D
Sbjct: 241 DADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDID 280
Score = 35.9 bits (79), Expect = 0.005
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 368
TTD+ LKE + Q G+I V +M T + KGFGF+ +
Sbjct: 239 TTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 38.7 bits (86), Expect = 8e-04
Identities = 23/76 (30%), Positives = 38/76 (50%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE 437
T++ L +F+ + + +V+ DP T+RS+GFG++ + A + A + GR V
Sbjct: 106 TENDLGDFFGEGVTSIRLVI--DPLTERSRGFGYVEFETADTLSAALALSGEDLMGRPVR 163
Query: 438 PKRAVPREEIKRPEAS 485
A PR R E S
Sbjct: 164 ITVAEPRRSFAREERS 179
Score = 35.1 bits (77), Expect = 0.010
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYD 652
L D+ E DL ++F + S+ +V D T + RG G+VEF+ D
Sbjct: 101 LSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETAD 144
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 38.3 bits (85), Expect = 0.001
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
L +D E L+ +F G + SV + TDK +G+++G FVEF
Sbjct: 99 LPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 36.7 bits (81), Expect = 0.003
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 533 EEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRVCLQ 676
E+DL+ F FG + V + DK+T +G +++F D R L+
Sbjct: 336 EDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 36.3 bits (80), Expect = 0.004
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +2
Query: 533 EEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRV 667
E+ +R YFS FG ++ + + +++TG + F+EF+ D + V
Sbjct: 118 EKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVV 162
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 35.9 bits (79), Expect = 0.005
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +2
Query: 500 VVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRVCL 673
V L + EEE L YF G+I V +V D +T +G +++F VD+ L
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329
Score = 34.3 bits (75), Expect = 0.017
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 261 DSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI-DGRIVE 437
+ L ++ G I V +++DPKT KGF +I + VD+A K+ +GR +
Sbjct: 283 EEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNEKKMPEGRTLR 342
Query: 438 PKRA 449
RA
Sbjct: 343 IMRA 346
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 34.3 bits (75), Expect = 0.017
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 368
TD +K +E +G+I V + +D + RSKGFG+I Y
Sbjct: 352 TDEDVKAIFEPFGDIEFVHLQRDDQN-RSKGFGYIQY 387
Score = 32.3 bits (70), Expect = 0.068
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 395
T L +F+EQ G + D +++D + RSKG ++ + V A
Sbjct: 252 TSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAA 297
Score = 29.1 bits (62), Expect = 0.63
Identities = 16/72 (22%), Positives = 37/72 (51%)
Frame = +2
Query: 425 KNCRAKTSSSKGRD*KTRS*CHR*KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKE 604
KN +A+ ++ R HR + + + ++ +ED++ F FG+I V + D +
Sbjct: 319 KNRKAREAAELARAASAEIPFHR--LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-D 375
Query: 605 TGKKRGLGFVEF 640
+ +G G++++
Sbjct: 376 QNRSKGFGYIQY 387
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 34.3 bits (75), Expect = 0.017
Identities = 20/79 (25%), Positives = 37/79 (46%)
Frame = +3
Query: 270 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 449
L+E + ++G I + P T+ SKG+GF+++S +A N ++G + KR
Sbjct: 437 LEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINT----LNGVLFGKKRL 492
Query: 450 VPREEIKRPEASATVKKLF 506
KR + + +F
Sbjct: 493 FVNYAEKREDRKKRLSAIF 511
Score = 29.9 bits (64), Expect = 0.36
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 536 EDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
+ L E FS FG I S ++ + T +G GFV F
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSF 469
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 32.7 bits (71), Expect = 0.051
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 500 VVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFD 643
V GL + +E+L Y + FG + S + D ET +G GF F+
Sbjct: 298 VYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFE 345
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 374
T+D +L + ++G++ + D +T KG+GF + +
Sbjct: 307 TSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEE 346
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 32.3 bits (70), Expect = 0.068
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +3
Query: 264 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI-DGRIVEP 440
+++K++++QWG ++ V V+KD + + F+ + +A + + I DGR +
Sbjct: 97 ATVKDYFQQWGPLLHVKVLKD---WLQRPYSFVQFQNTDDASKALSEAQNTILDGRHIRI 153
Query: 441 KRAVPREEIK 470
+RA I+
Sbjct: 154 ERAKVNRTIR 163
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 31.9 bits (69), Expect = 0.089
Identities = 14/76 (18%), Positives = 38/76 (50%)
Frame = +3
Query: 261 DSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEP 440
+ ++ F+ +G++ V + K + + KGFG++ + + A + ++ R++
Sbjct: 770 EKDVETFFRDYGQVESVRIPK--RFNQHKGFGYVVMTTNQDAENALSAAGKQLGNRVLNV 827
Query: 441 KRAVPREEIKRPEASA 488
+ PRE +++ S+
Sbjct: 828 VLSKPRESLEKTRVSS 843
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 31.5 bits (68), Expect = 0.12
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 434
T S L++ + +G I+ ++ P + SKG+GF+ + Q A++ ++G +V
Sbjct: 395 TCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDT----LNGMMV 450
Query: 435 EPKR 446
KR
Sbjct: 451 GKKR 454
Score = 29.1 bits (62), Expect = 0.63
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 533 EEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
+ L + FS FG+I+S + +G +G GFV F
Sbjct: 397 KSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAF 432
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 31.5 bits (68), Expect = 0.12
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +2
Query: 500 VVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
V GL + + EE+L+ F FG IV V + K G GFV+F
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGK------GCGFVQF 345
Score = 31.1 bits (67), Expect = 0.16
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 515 LKQDIEEEDLREYF-STFGNIVSVSVVTDKETGKKRGLGFVEF 640
L ++ E D+ F S + + S ++TD +T RG GFV F
Sbjct: 193 LSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRF 235
Score = 27.5 bits (58), Expect = 1.9
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +3
Query: 279 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 371
F ++ +M DP+T S+G+GF+ ++
Sbjct: 206 FASRYNSCKSAKIMTDPQTNVSRGYGFVRFT 236
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 30.3 bits (65), Expect = 0.27
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLR-EYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
+++ GL +I EE + ++T + +V+++ +KET K R F +F
Sbjct: 72 EIILQGLTPEILEEHIELALYATGAKVSTVTLIREKETQKSRCFAFAKF 120
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 29.5 bits (63), Expect = 0.48
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFD 643
+V + + + E LR +F +FG + + + + TG GL + FD
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFD 143
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 29.5 bits (63), Expect = 0.48
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +3
Query: 270 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD---EAQNNR 407
L + + G++V + + RSKG+GF++Y D EA NN+
Sbjct: 115 LYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQ 163
Score = 28.7 bits (61), Expect = 0.83
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIV 434
TDS L E Q G +V++ + +D GFGF + V+ A Q K+ G+ +
Sbjct: 23 TDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGKPI 82
Query: 435 EPKRA 449
RA
Sbjct: 83 RVNRA 87
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 28.7 bits (61), Expect = 0.83
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 500 VVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
V GL ++ E+DL+ F FG I+++ + K G GFV++
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGK------GCGFVQY 339
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 368
++ + E + Q G + ++ DP+T KG+GF +
Sbjct: 19 SEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 661 VNXIITIKLYKTQAPFLSSFFICHNTNRXNISK 563
+N I +IKLY + PFL NT ++ K
Sbjct: 438 INNIRSIKLYAWETPFLQKLLHIRNTKELSMLK 470
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRI 431
TT+ + + + GEI +++ D TK GF F+ Y +D + +D RI
Sbjct: 43 TTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYISRTSLDERI 102
Query: 432 V 434
+
Sbjct: 103 I 103
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = +3
Query: 276 EFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 404
+ ++Q G + ++ DP++ + KG+GF Y A N
Sbjct: 23 DIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRN 65
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 500 VVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDK 601
V L I E+++RE FG I + +VT++
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTER 241
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 181 PSESGDDYEEPEHTRKLFI 237
PS G YEEPEHTR +I
Sbjct: 76 PSADGG-YEEPEHTRLSYI 93
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 25.8 bits (54), Expect = 5.9
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 327 PKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREE-IKRPEASATVKK 500
P+T+ S+ F F+ Y + ++A +++ GR +E V R E K+P S K
Sbjct: 41 PRTRTSRPFAFVEYEDSRDAEDAY----YEVHGRRLERGGGVLRVEWAKQPPPSGPGSK 95
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -2
Query: 503 QLFNGGTSFWSFNLFPWNCSFWLDNSSVNFVRPIILSFINHMGLRICNK 357
QL SF +F +F + L S N++ + +FI+H+ R+ N+
Sbjct: 1246 QLTPTSKSFQNFLIFAGVIYYLLAASGQNYIFISMTNFISHLNNRLLNR 1294
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 542 LREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDR 664
L F ++G ++ V ++T + RG FV FD + R
Sbjct: 46 LEHLFGSYGKVIDVQA---RKTLRMRGQAFVVFDNLENASR 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,446
Number of Sequences: 5004
Number of extensions: 50744
Number of successful extensions: 202
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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