Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060649.seq
(687 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 73 2e-13
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 73 2e-13
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 72 3e-13
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 72 3e-13
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 72 3e-13
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 72 3e-13
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 69 4e-12
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 69 4e-12
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 69 4e-12
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 68 5e-12
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 64 6e-11
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 63 2e-10
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 62 3e-10
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 62 3e-10
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 61 8e-10
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 61 8e-10
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 57 1e-08
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 56 3e-08
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 55 4e-08
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 55 4e-08
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 55 4e-08
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 54 7e-08
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 54 7e-08
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 54 9e-08
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 53 2e-07
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 53 2e-07
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 53 2e-07
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 53 2e-07
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 52 3e-07
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 51 6e-07
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 51 8e-07
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 50 1e-06
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 50 1e-06
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 50 1e-06
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 50 1e-06
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 50 1e-06
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 50 1e-06
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 50 2e-06
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 50 2e-06
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 50 2e-06
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 50 2e-06
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 50 2e-06
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 50 2e-06
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 50 2e-06
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 49 3e-06
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 49 3e-06
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 48 4e-06
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 48 4e-06
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 48 4e-06
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 48 6e-06
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 47 1e-05
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 46 2e-05
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 46 2e-05
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 46 3e-05
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 46 3e-05
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 45 4e-05
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 45 5e-05
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 45 5e-05
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 44 7e-05
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 44 7e-05
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 44 7e-05
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 44 7e-05
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 44 7e-05
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 44 7e-05
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 44 7e-05
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 44 9e-05
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 44 9e-05
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 44 9e-05
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 44 1e-04
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 43 2e-04
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 43 2e-04
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 43 2e-04
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 43 2e-04
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 42 3e-04
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 42 3e-04
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 42 3e-04
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 42 3e-04
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 42 3e-04
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 42 4e-04
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 42 4e-04
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 42 5e-04
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 42 5e-04
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 42 5e-04
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 42 5e-04
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 42 5e-04
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 42 5e-04
At5g51300.2 68418.m06360 splicing factor-related contains simila... 41 7e-04
At5g51300.1 68418.m06359 splicing factor-related contains simila... 41 7e-04
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 41 7e-04
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 41 7e-04
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 41 9e-04
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 41 9e-04
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 40 0.001
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 40 0.001
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 40 0.002
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 40 0.002
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 40 0.002
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 40 0.002
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 40 0.002
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 40 0.002
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 39 0.003
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 39 0.003
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 39 0.003
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 39 0.003
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 39 0.003
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 39 0.004
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 39 0.004
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 39 0.004
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 38 0.005
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 38 0.005
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 38 0.005
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 38 0.005
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 38 0.005
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 38 0.006
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 38 0.006
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 38 0.006
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 38 0.006
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 38 0.006
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 38 0.006
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 38 0.006
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 38 0.006
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 38 0.006
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 38 0.006
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 38 0.006
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 38 0.006
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 38 0.006
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 38 0.006
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 38 0.008
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 38 0.008
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 38 0.008
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 37 0.014
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 36 0.019
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 36 0.019
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 36 0.025
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 36 0.025
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 36 0.025
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 36 0.025
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 36 0.033
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 35 0.044
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 35 0.044
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 35 0.044
At2g47310.1 68415.m05906 flowering time control protein-related ... 35 0.058
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 35 0.058
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 34 0.077
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 34 0.077
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 34 0.077
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 34 0.10
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 34 0.10
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 34 0.10
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 33 0.13
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 33 0.13
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 33 0.13
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 33 0.18
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 33 0.23
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 33 0.23
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 32 0.31
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 32 0.31
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 32 0.41
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 31 0.54
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 31 0.95
At5g09830.1 68418.m01137 BolA-like family protein contains Pfam ... 30 1.3
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 30 1.3
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 30 1.3
At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil... 30 1.3
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 30 1.3
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 30 1.7
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 2.2
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 29 2.2
At5g13655.1 68418.m01588 hypothetical protein 29 2.9
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 29 2.9
At1g41855.1 68414.m04833 hypothetical protein 29 2.9
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 29 3.8
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 29 3.8
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 28 5.0
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 28 5.0
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 72.5 bits (170), Expect = 2e-13
Identities = 34/76 (44%), Positives = 48/76 (63%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE 437
T+S K ++EQ+G DVVVM D T+R +GFGFITY V++ H+++G++VE
Sbjct: 120 TESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVE 179
Query: 438 PKRAVPREEIKRPEAS 485
KRAVP+E P S
Sbjct: 180 VKRAVPKELSPGPSRS 195
Score = 69.3 bits (162), Expect = 2e-12
Identities = 29/70 (41%), Positives = 47/70 (67%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 434
T + LKE++ +GE+++ V++KD T R++GFGF+ ++ V E H IDGR+V
Sbjct: 17 TNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVITEKHNIDGRLV 75
Query: 435 EPKRAVPREE 464
E K+AVPR++
Sbjct: 76 EAKKAVPRDD 85
Score = 52.8 bits (121), Expect = 2e-07
Identities = 21/48 (43%), Positives = 31/48 (64%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
K+ G+ D EE L+EYFS+FG ++ ++ D+ TG+ RG GFV F
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF 54
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRVCLQ 676
K+ GL + E D + YF FG V V+ D T + RG GF+ +D + V++V L+
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 72.5 bits (170), Expect = 2e-13
Identities = 34/76 (44%), Positives = 48/76 (63%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE 437
T+S K ++EQ+G DVVVM D T+R +GFGFITY V++ H+++G++VE
Sbjct: 120 TESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVE 179
Query: 438 PKRAVPREEIKRPEAS 485
KRAVP+E P S
Sbjct: 180 VKRAVPKELSPGPSRS 195
Score = 69.3 bits (162), Expect = 2e-12
Identities = 29/70 (41%), Positives = 47/70 (67%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 434
T + LKE++ +GE+++ V++KD T R++GFGF+ ++ V E H IDGR+V
Sbjct: 17 TNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVITEKHNIDGRLV 75
Query: 435 EPKRAVPREE 464
E K+AVPR++
Sbjct: 76 EAKKAVPRDD 85
Score = 52.8 bits (121), Expect = 2e-07
Identities = 21/48 (43%), Positives = 31/48 (64%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
K+ G+ D EE L+EYFS+FG ++ ++ D+ TG+ RG GFV F
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF 54
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRVCLQ 676
K+ GL + E D + YF FG V V+ D T + RG GF+ +D + V++V L+
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 72.1 bits (169), Expect = 3e-13
Identities = 31/68 (45%), Positives = 46/68 (67%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE 437
T+ K +++Q+G I DVVVM D T+R +GFGFIT+ VD + H+++G++VE
Sbjct: 122 TEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVE 181
Query: 438 PKRAVPRE 461
KRAVP+E
Sbjct: 182 VKRAVPKE 189
Score = 63.3 bits (147), Expect = 1e-10
Identities = 28/70 (40%), Positives = 46/70 (65%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 434
T + L++++ +G++V+ V+M+D T R++GFGFI ++ V E H IDGR V
Sbjct: 17 TDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIMDKHIIDGRTV 75
Query: 435 EPKRAVPREE 464
E K+AVPR++
Sbjct: 76 EAKKAVPRDD 85
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/57 (45%), Positives = 32/57 (56%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRV 667
K+ GL I EE+ + YF FG I V V+ D T + RG GF+ FD D VDRV
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV 167
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/61 (36%), Positives = 37/61 (60%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRVCLQ 676
K+ G+ D +EE LR+YFS +G++V ++ D+ TG+ RG GF+ F +RV +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 677 Q 679
+
Sbjct: 67 K 67
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 72.1 bits (169), Expect = 3e-13
Identities = 31/68 (45%), Positives = 46/68 (67%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE 437
T+ K +++Q+G I DVVVM D T+R +GFGFIT+ VD + H+++G++VE
Sbjct: 122 TEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVE 181
Query: 438 PKRAVPRE 461
KRAVP+E
Sbjct: 182 VKRAVPKE 189
Score = 63.3 bits (147), Expect = 1e-10
Identities = 28/70 (40%), Positives = 46/70 (65%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 434
T + L++++ +G++V+ V+M+D T R++GFGFI ++ V E H IDGR V
Sbjct: 17 TDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIMDKHIIDGRTV 75
Query: 435 EPKRAVPREE 464
E K+AVPR++
Sbjct: 76 EAKKAVPRDD 85
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/57 (45%), Positives = 32/57 (56%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRV 667
K+ GL I EE+ + YF FG I V V+ D T + RG GF+ FD D VDRV
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV 167
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/61 (36%), Positives = 37/61 (60%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRVCLQ 676
K+ G+ D +EE LR+YFS +G++V ++ D+ TG+ RG GF+ F +RV +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 677 Q 679
+
Sbjct: 67 K 67
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 72.1 bits (169), Expect = 3e-13
Identities = 31/68 (45%), Positives = 46/68 (67%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE 437
T+ K +++Q+G I DVVVM D T+R +GFGFIT+ VD + H+++G++VE
Sbjct: 122 TEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVE 181
Query: 438 PKRAVPRE 461
KRAVP+E
Sbjct: 182 VKRAVPKE 189
Score = 63.3 bits (147), Expect = 1e-10
Identities = 28/70 (40%), Positives = 46/70 (65%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 434
T + L++++ +G++V+ V+M+D T R++GFGFI ++ V E H IDGR V
Sbjct: 17 TDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIMDKHIIDGRTV 75
Query: 435 EPKRAVPREE 464
E K+AVPR++
Sbjct: 76 EAKKAVPRDD 85
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/57 (45%), Positives = 32/57 (56%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRV 667
K+ GL I EE+ + YF FG I V V+ D T + RG GF+ FD D VDRV
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV 167
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/61 (36%), Positives = 37/61 (60%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRVCLQ 676
K+ G+ D +EE LR+YFS +G++V ++ D+ TG+ RG GF+ F +RV +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 677 Q 679
+
Sbjct: 67 K 67
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 72.1 bits (169), Expect = 3e-13
Identities = 31/68 (45%), Positives = 47/68 (69%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE 437
T++ K +++Q+G I DVVVM D T+R +GFGFIT+ VD + H+++G++VE
Sbjct: 134 TEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVE 193
Query: 438 PKRAVPRE 461
KRAVP+E
Sbjct: 194 VKRAVPKE 201
Score = 64.5 bits (150), Expect = 6e-11
Identities = 27/70 (38%), Positives = 49/70 (70%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 434
T + L+E++ ++G++V+ V+M+D T R++GFGFI ++ + + ++ H IDGR V
Sbjct: 26 TDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK-HIIDGRTV 84
Query: 435 EPKRAVPREE 464
E K+AVPR++
Sbjct: 85 EAKKAVPRDD 94
Score = 52.0 bits (119), Expect = 4e-07
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRVCLQ 676
K+ G+ D +EE L+EYF +G++V ++ D+ TG+ RG GF+ F +RV +
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75
Query: 677 Q 679
+
Sbjct: 76 K 76
Score = 51.2 bits (117), Expect = 6e-07
Identities = 23/57 (40%), Positives = 30/57 (52%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRV 667
K+ GL I E + + YF FG I V V+ D T + RG GF+ FD + VD V
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMV 179
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 68.5 bits (160), Expect = 4e-12
Identities = 29/68 (42%), Positives = 47/68 (69%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE 437
T++ K+++ Q+G I DVVVM D +T+R +GFGFI+Y VD+ H+++G++VE
Sbjct: 45 TEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVE 104
Query: 438 PKRAVPRE 461
K AVP++
Sbjct: 105 VKLAVPKD 112
Score = 51.2 bits (117), Expect = 6e-07
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRV 667
K+ GL + E + ++YF+ FG I V V+ D T + RG GF+ +D + VD+V
Sbjct: 34 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKV 90
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 68.5 bits (160), Expect = 4e-12
Identities = 29/68 (42%), Positives = 47/68 (69%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE 437
T++ K+++ Q+G I DVVVM D +T+R +GFGFI+Y VD+ H+++G++VE
Sbjct: 118 TEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVE 177
Query: 438 PKRAVPRE 461
K AVP++
Sbjct: 178 VKLAVPKD 185
Score = 65.7 bits (153), Expect = 3e-11
Identities = 26/70 (37%), Positives = 50/70 (71%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 434
T++ L++++ +GE+++ V+MKD T R++GFGF+ ++ ++ + + H IDG+IV
Sbjct: 17 TSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK-HIIDGKIV 75
Query: 435 EPKRAVPREE 464
E K+AVPR++
Sbjct: 76 EAKKAVPRDD 85
Score = 51.2 bits (117), Expect = 6e-07
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRV 667
K+ GL + E + ++YF+ FG I V V+ D T + RG GF+ +D + VD+V
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKV 163
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/59 (35%), Positives = 35/59 (59%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRVCL 673
K+ G+ + E+ LR+YF +FG ++ ++ D+ TG+ RG GFV F + +RV L
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVL 65
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 68.5 bits (160), Expect = 4e-12
Identities = 29/68 (42%), Positives = 47/68 (69%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE 437
T++ K+++ Q+G I DVVVM D +T+R +GFGFI+Y VD+ H+++G++VE
Sbjct: 118 TEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVE 177
Query: 438 PKRAVPRE 461
K AVP++
Sbjct: 178 VKLAVPKD 185
Score = 65.7 bits (153), Expect = 3e-11
Identities = 26/70 (37%), Positives = 50/70 (71%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 434
T++ L++++ +GE+++ V+MKD T R++GFGF+ ++ ++ + + H IDG+IV
Sbjct: 17 TSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK-HIIDGKIV 75
Query: 435 EPKRAVPREE 464
E K+AVPR++
Sbjct: 76 EAKKAVPRDD 85
Score = 51.2 bits (117), Expect = 6e-07
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRV 667
K+ GL + E + ++YF+ FG I V V+ D T + RG GF+ +D + VD+V
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKV 163
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/59 (35%), Positives = 35/59 (59%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRVCL 673
K+ G+ + E+ LR+YF +FG ++ ++ D+ TG+ RG GFV F + +RV L
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVL 65
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/78 (38%), Positives = 46/78 (58%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 434
TT+ K ++E++G DVVVM D T R +GFGF+TY V+ + H++ + V
Sbjct: 131 TTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHELSDKRV 190
Query: 435 EPKRAVPREEIKRPEASA 488
E KRA+P+E I+ +A
Sbjct: 191 EVKRAIPKEGIQSNNGNA 208
Score = 48.8 bits (111), Expect = 3e-06
Identities = 21/50 (42%), Positives = 31/50 (62%)
Frame = +2
Query: 491 R*KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
R K+ G+ ++ EE L++YFS +G ++ V +K TGK RG GFV F
Sbjct: 5 RYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRF 54
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/57 (38%), Positives = 30/57 (52%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRV 667
K+ GL + EE+ + YF FG V V+ D T + RG GFV +D D V+ V
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVV 177
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/71 (28%), Positives = 46/71 (64%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 434
T++ +LK+++ ++G +++ VV K+ T + +GFGF+ ++ V +A + H I G+ V
Sbjct: 17 TSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD-THFILGKPV 75
Query: 435 EPKRAVPREEI 467
+ ++A+ + E+
Sbjct: 76 DVRKAIRKHEL 86
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 64.5 bits (150), Expect = 6e-11
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRI 431
TT + + + ++GEI D V+MKD KT + +GFGF+TY+ + +VD+ Q+N H I G+
Sbjct: 53 TTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQDN--HIIIGKQ 110
Query: 432 VEPKRAVPREEIKRPEASATVKKLFV 509
VE KR +PR + + KK+FV
Sbjct: 111 VEIKRTIPRGSMSSNDFK--TKKIFV 134
Score = 60.9 bits (141), Expect = 8e-10
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Frame = +3
Query: 261 DSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE--AQNNRPHKIDGRIV 434
D KEF+ Q+GE+ + +M+D T RS+GFGF+TY MVD A+ NR ++ G V
Sbjct: 143 DDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNR-IELSGTQV 201
Query: 435 EPKRAVPREEIKRPEASATVKKLF 506
E K+A P K+P + T K F
Sbjct: 202 EIKKAEP----KKPNSVTTPSKRF 221
Score = 49.6 bits (113), Expect = 2e-06
Identities = 17/57 (29%), Positives = 33/57 (57%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRV 667
K+ G+ +++++ +E+F FG + ++ D TG+ RG GFV ++ D VD +
Sbjct: 131 KIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHL 187
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRV 667
K+ GL ++ + ++F +G I ++ D++TG+ RG GFV + VD+V
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKV 99
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 62.9 bits (146), Expect = 2e-10
Identities = 30/80 (37%), Positives = 50/80 (62%)
Frame = +3
Query: 270 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 449
LK++ ++G++ D +VMKD T RS+GFG++T++ A A H + RI+E K A
Sbjct: 19 LKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKGE-HFLGNRILEVKVA 77
Query: 450 VPREEIKRPEASATVKKLFV 509
P+EE+++P T ++FV
Sbjct: 78 TPKEEMRQPAKKVT--RIFV 95
Score = 54.4 bits (125), Expect = 7e-08
Identities = 25/73 (34%), Positives = 43/73 (58%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE 437
++S + +E++GEI D+ + KD +K+ +G GFIT+S A V++ + H + G V
Sbjct: 103 SESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMED-THDLGGTTVA 161
Query: 438 PKRAVPREEIKRP 476
RA P+E+ P
Sbjct: 162 VDRATPKEDDHPP 174
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/74 (33%), Positives = 42/74 (56%)
Frame = +3
Query: 270 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 449
L++++ ++G I D + KDPK +GFGF+T+++ + D R H+I G+ V A
Sbjct: 256 LRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVA-RRSHEICGQEVAIDSA 314
Query: 450 VPREEIKRPEASAT 491
P +E P A A+
Sbjct: 315 TPLDE-AGPSAGAS 327
Score = 47.6 bits (108), Expect = 8e-06
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
K+V G+ DI+ + L++Y S FG++ V+ D+ TG+ RG G+V F
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTF 51
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRV 667
K+ L Q+ +DLR+YF FG+I + D + RG GFV F DRV
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRV 297
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVD 661
++ A + + E D R +F +G I + + D + + RG+GF+ F D V+
Sbjct: 92 RIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVE 146
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 62.5 bits (145), Expect = 3e-10
Identities = 27/70 (38%), Positives = 46/70 (65%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 434
T ++ L+E++ +GE++ V VM++ T R +GFGF+ +S ++D ++ H ID R V
Sbjct: 17 TDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDK-HHIDNRDV 75
Query: 435 EPKRAVPREE 464
+ KRA+ REE
Sbjct: 76 DVKRAMSREE 85
Score = 58.4 bits (135), Expect = 4e-09
Identities = 26/57 (45%), Positives = 36/57 (63%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRV 667
K+ G+ D +E LREYFS FG ++ V+V+ +K TG+ RG GFV F +DRV
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRV 63
Score = 57.2 bits (132), Expect = 1e-08
Identities = 23/68 (33%), Positives = 41/68 (60%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE 437
T + ++E +G + D V+M D T+R +GFGF+++ VD + H ++G+ VE
Sbjct: 122 TSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVE 181
Query: 438 PKRAVPRE 461
KRA+P++
Sbjct: 182 VKRALPKD 189
Score = 49.2 bits (112), Expect = 3e-06
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRV 667
K+ GL + ++ R YF T+G + ++ D+ T + RG GFV FD D VD V
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLV 167
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 62.1 bits (144), Expect = 3e-10
Identities = 24/68 (35%), Positives = 41/68 (60%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE 437
TD ++++E +G + DV +M D T R +GFGF+++ VD + H + G+ VE
Sbjct: 122 TDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVE 181
Query: 438 PKRAVPRE 461
KRA+P++
Sbjct: 182 VKRALPKD 189
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/70 (38%), Positives = 42/70 (60%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 434
T + L+E + +GE+ +VM+D T R +GFGF+ +S ++D + H ID R V
Sbjct: 17 TDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEK-HSIDTREV 75
Query: 435 EPKRAVPREE 464
+ KRA+ REE
Sbjct: 76 DVKRAMSREE 85
Score = 55.2 bits (127), Expect = 4e-08
Identities = 22/57 (38%), Positives = 34/57 (59%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRV 667
K+ GL + +E+ R+YF +G + V+++ D+ T + RG GFV FD D VD V
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSV 167
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/57 (38%), Positives = 34/57 (59%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRV 667
K+ G+ + +E+ LRE+F+ +G + V+ DK TG+ RG GFV F +DRV
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 60.9 bits (141), Expect = 8e-10
Identities = 30/85 (35%), Positives = 50/85 (58%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 434
TT++ + + ++GEI D V+M+D T + +GFGFIT++ +VD+ + H I+G+ V
Sbjct: 30 TTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED-THVINGKQV 88
Query: 435 EPKRAVPREEIKRPEASATVKKLFV 509
E KR +P+ KK+FV
Sbjct: 89 EIKRTIPKGAGGNQSKDIKTKKIFV 113
Score = 55.6 bits (128), Expect = 3e-08
Identities = 21/57 (36%), Positives = 36/57 (63%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRV 667
K+ G+ + E++L+++F+ +GN+V V+ D ET + RG GFV FD + VD +
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDEL 166
Score = 54.8 bits (126), Expect = 5e-08
Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE--AQNNRPHKIDGRI 431
T+ LK+F+ ++G +V+ V++D +T RS+GFGF+ + +VDE ++ N D +
Sbjct: 121 TEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQ- 179
Query: 432 VEPKRAVPREEIKRPEAS 485
VE K+A P++ + R S
Sbjct: 180 VEIKKAEPKKSLNRSPPS 197
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRV 667
K+ GL +D ++F +G I ++ D+ TG+ RG GF+ F VD+V
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKV 76
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 60.9 bits (141), Expect = 8e-10
Identities = 30/85 (35%), Positives = 50/85 (58%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 434
TT++ + + ++GEI D V+M+D T + +GFGFIT++ +VD+ + H I+G+ V
Sbjct: 30 TTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED-THVINGKQV 88
Query: 435 EPKRAVPREEIKRPEASATVKKLFV 509
E KR +P+ KK+FV
Sbjct: 89 EIKRTIPKGAGGNQSKDIKTKKIFV 113
Score = 55.6 bits (128), Expect = 3e-08
Identities = 21/57 (36%), Positives = 36/57 (63%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRV 667
K+ G+ + E++L+++F+ +GN+V V+ D ET + RG GFV FD + VD +
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDEL 166
Score = 48.8 bits (111), Expect = 3e-06
Identities = 18/45 (40%), Positives = 32/45 (71%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE 392
T+ LK+F+ ++G +V+ V++D +T RS+GFGF+ + +VDE
Sbjct: 121 TEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDE 165
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRV 667
K+ GL +D ++F +G I ++ D+ TG+ RG GF+ F VD+V
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKV 76
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 57.2 bits (132), Expect = 1e-08
Identities = 29/77 (37%), Positives = 42/77 (54%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 434
T +++ ++EQ+GEIV+ VV+ D T RSKG+GF+T+ +A A N IDGR
Sbjct: 33 TQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMNPVIDGRRA 92
Query: 435 EPKRAVPREEIKRPEAS 485
A + RP S
Sbjct: 93 NCNLACLGAQKPRPPTS 109
Score = 55.2 bits (127), Expect = 4e-08
Identities = 24/63 (38%), Positives = 33/63 (52%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRVCLQ 676
K+ GL + + + +R YF FG IV V+TDK TG+ +G GFV F + R C
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 677 QIP 685
P
Sbjct: 83 MNP 85
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 55.6 bits (128), Expect = 3e-08
Identities = 28/65 (43%), Positives = 37/65 (56%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 434
T L ++E++GEIV V+ D T+RSKGFGF+T+ + A N H IDGR V
Sbjct: 20 TRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENPNHTIDGRTV 79
Query: 435 EPKRA 449
K A
Sbjct: 80 NCKLA 84
Score = 44.4 bits (100), Expect = 7e-05
Identities = 23/58 (39%), Positives = 27/58 (46%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRVC 670
K+ AGL E L YF FG IV VV D T + +G GFV F + R C
Sbjct: 10 KIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRAC 67
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 55.2 bits (127), Expect = 4e-08
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRI 431
TTD L+E + +G +VD +VM+D T RS+GFGF+TYS + A + K ++GR
Sbjct: 14 TTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRR 73
Query: 432 VEPK 443
V K
Sbjct: 74 VSVK 77
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVD 661
+V L ++ LRE FS +GN+V V+ D+ T + RG GFV + + +
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAE 58
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 55.2 bits (127), Expect = 4e-08
Identities = 24/63 (38%), Positives = 35/63 (55%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRVCLQ 676
KV GL + + E LR +F +G+I+ V+TDK TG+ +G GFV F + R C+
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 677 QIP 685
P
Sbjct: 85 PTP 87
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/58 (36%), Positives = 34/58 (58%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 428
T +L+ ++Q+G+I++ VV+ D T RSKG+GF+T+ A + IDGR
Sbjct: 35 TQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPTPIIDGR 92
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 55.2 bits (127), Expect = 4e-08
Identities = 23/57 (40%), Positives = 35/57 (61%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRV 667
K+ GL +EE++L+ YF +G+I+ ++ D TG+ RG GFV F D VDR+
Sbjct: 158 KIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRL 214
Score = 54.4 bits (125), Expect = 7e-08
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 434
TT + ++ ++GE+VD V+M D T +GFGF+T++ + V E H ID R V
Sbjct: 77 TTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADS-AVAEKVLEEDHVIDDRKV 135
Query: 435 EPKRAVPR-EEIKRPEASATVKKLFV 509
+ KR +PR ++ +A + +K+FV
Sbjct: 136 DLKRTLPRGDKDTDIKAVSKTRKIFV 161
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +3
Query: 261 DSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVE 437
+ LK ++ +G+I++ +M D T RS+GFGF+T+ VD + + H++ + VE
Sbjct: 170 EDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVE 229
Query: 438 PKRAVPR 458
KRA P+
Sbjct: 230 IKRAEPK 236
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
K+ G+ + E YF FG +V ++TD+ TG RG GFV F
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTF 114
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 54.4 bits (125), Expect = 7e-08
Identities = 24/63 (38%), Positives = 34/63 (53%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRVCLQ 676
KV GL + + LR YF FG+IV V+TDK +G+ +G GFV F + + C+
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 677 QIP 685
P
Sbjct: 68 PAP 70
Score = 50.0 bits (114), Expect = 1e-06
Identities = 22/54 (40%), Positives = 35/54 (64%)
Frame = +3
Query: 267 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 428
SL+ ++EQ+G+IV+ VV+ D + RSKG+GF+T+ +A + IDGR
Sbjct: 22 SLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGR 75
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 54.4 bits (125), Expect = 7e-08
Identities = 24/63 (38%), Positives = 34/63 (53%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRVCLQ 676
KV GL + + LR YF FG+IV V+TDK +G+ +G GFV F + + C+
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 677 QIP 685
P
Sbjct: 68 PAP 70
Score = 50.0 bits (114), Expect = 1e-06
Identities = 22/54 (40%), Positives = 35/54 (64%)
Frame = +3
Query: 267 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 428
SL+ ++EQ+G+IV+ VV+ D + RSKG+GF+T+ +A + IDGR
Sbjct: 22 SLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGR 75
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 54.0 bits (124), Expect = 9e-08
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = +2
Query: 512 GLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFD 643
GL QD +E+DL + FS FGN++ ++ D++TGK R GFV F+
Sbjct: 13 GLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFE 56
Score = 35.5 bits (78), Expect = 0.033
Identities = 12/47 (25%), Positives = 28/47 (59%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 395
T + L + + ++G ++D ++ D T +S+ FGF+T+ + + +A
Sbjct: 18 TDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDA 64
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/63 (38%), Positives = 32/63 (50%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRVCLQ 676
KV GL + +++R YF FG I+ ++TDK TGK +G GFV F D R
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 677 QIP 685
P
Sbjct: 78 PNP 80
Score = 49.6 bits (113), Expect = 2e-06
Identities = 20/58 (34%), Positives = 36/58 (62%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 428
T ++ ++EQ+GEI++ V++ D T +SKG+GF+T+ ++ A + IDGR
Sbjct: 28 TPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGR 85
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/63 (38%), Positives = 32/63 (50%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRVCLQ 676
KV GL + +++R YF FG I+ ++TDK TGK +G GFV F D R
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 677 QIP 685
P
Sbjct: 78 PNP 80
Score = 49.6 bits (113), Expect = 2e-06
Identities = 20/58 (34%), Positives = 36/58 (62%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 428
T ++ ++EQ+GEI++ V++ D T +SKG+GF+T+ ++ A + IDGR
Sbjct: 28 TPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGR 85
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/63 (36%), Positives = 33/63 (52%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRVCLQ 676
KV GL + + E LR++F +G I+ V+ DK TG+ +G GFV F + R C
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 677 QIP 685
P
Sbjct: 85 PTP 87
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/58 (39%), Positives = 35/58 (60%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 428
T +L++ +EQ+GEI++ VV+ D T RSKG+GF+T+ A + IDGR
Sbjct: 35 TQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGR 92
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/63 (38%), Positives = 32/63 (50%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRVCLQ 676
KV GL + +++R YF FG I+ ++TDK TGK +G GFV F D R
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 677 QIP 685
P
Sbjct: 78 PNP 80
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/58 (32%), Positives = 35/58 (60%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 428
T ++ +++Q+GEI++ V++ D T +SKG+GF+T+ + A + IDGR
Sbjct: 28 TPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGR 85
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 52.4 bits (120), Expect = 3e-07
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI-DGRI 431
TTD SL++ + +G+I + +++D +T+R KGFGFIT+ +A + KI DGR+
Sbjct: 18 TTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRL 77
Query: 432 VEPKRAVPREEIK 470
+ + A EE++
Sbjct: 78 IFVEVAKNAEEVR 90
Score = 41.1 bits (92), Expect = 7e-04
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 533 EEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYD 652
++ LR+ FS FG I ++ D ET + +G GF+ FD D
Sbjct: 20 DQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSED 59
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 51.2 bits (117), Expect = 6e-07
Identities = 20/48 (41%), Positives = 31/48 (64%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
K+ G+ ++E+ LRE F+ +G +V V+ D+ETG+ RG GFV F
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTF 88
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +3
Query: 261 DSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVE 437
+ SL+E + ++GE+VD V+ D +T RS+GFGF+T++ + A Q + GR+V+
Sbjct: 53 EDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVK 112
Query: 438 PKRAVPR 458
A R
Sbjct: 113 VNYANDR 119
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 50.8 bits (116), Expect = 8e-07
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +3
Query: 240 WTRL*TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHK 416
WT T+D L++ +E++G +V+ V+ D + RS+GFGFIT+ + +DEA
Sbjct: 16 WT---TSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMD 72
Query: 417 IDGRIVEPKRAVPRE 461
+DGR + +A P +
Sbjct: 73 LDGRTITVDKAQPHQ 87
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRI 431
TT+ L++ + +G++VD V+ D + RSKGFGF+TY+ ++A+ K +DG +
Sbjct: 45 TTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWV 104
Query: 432 VEPKRAVPREEIKRP 476
+ A PRE +RP
Sbjct: 105 IFVDPARPREP-RRP 118
Score = 43.6 bits (98), Expect = 1e-04
Identities = 16/48 (33%), Positives = 32/48 (66%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
++ +GL + E L++ F++FG +V V+TD+++G+ +G GFV +
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTY 82
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/58 (39%), Positives = 37/58 (63%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 428
T ++K+ +EQ+GEI++ VV+ D + RSKG+GF+T+ +A A + IDGR
Sbjct: 24 THKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGR 81
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRVCLQ 676
KV GL + +E ++++F FG I+ V+TDK +G+ +G GFV F + C+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 677 QIP 685
P
Sbjct: 74 ATP 76
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/58 (39%), Positives = 37/58 (63%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 428
T ++K+ +EQ+GEI++ VV+ D + RSKG+GF+T+ +A A + IDGR
Sbjct: 24 THKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGR 81
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRVCLQ 676
KV GL + +E ++++F FG I+ V+TDK +G+ +G GFV F + C+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 677 QIP 685
P
Sbjct: 74 ATP 76
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/58 (39%), Positives = 37/58 (63%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 428
T ++K+ +EQ+GEI++ VV+ D + RSKG+GF+T+ +A A + IDGR
Sbjct: 24 THKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGR 81
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRVCLQ 676
KV GL + +E ++++F FG I+ V+TDK +G+ +G GFV F + C+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 677 QIP 685
P
Sbjct: 74 ATP 76
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 50.0 bits (114), Expect = 1e-06
Identities = 20/49 (40%), Positives = 31/49 (63%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFD 643
K+ GL ++ LR+ F+ FG++V V+ D+ETG+ RG GFV F+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84
Score = 44.0 bits (99), Expect = 9e-05
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRI 431
T D+SL++ + +G++VD V+ D +T RS+GFGF+ ++ A + K ++GR
Sbjct: 46 TDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRH 105
Query: 432 VEPKRAVPREEIKR 473
+ A R R
Sbjct: 106 IRVNPANDRPSAPR 119
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 50.0 bits (114), Expect = 1e-06
Identities = 20/49 (40%), Positives = 31/49 (63%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFD 643
K+ GL ++ LR+ F+ FG++V V+ D+ETG+ RG GFV F+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84
Score = 44.0 bits (99), Expect = 9e-05
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRI 431
T D+SL++ + +G++VD V+ D +T RS+GFGF+ ++ A + K ++GR
Sbjct: 46 TDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRH 105
Query: 432 VEPKRAVPREEIKR 473
+ A R R
Sbjct: 106 IRVNPANDRPSAPR 119
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/77 (35%), Positives = 42/77 (54%)
Frame = +3
Query: 240 WTRL*TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI 419
WT T L F++++GEI+ V V+ D +T RS+G+GF+T+ A A + I
Sbjct: 22 WT---TRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDPNPTI 78
Query: 420 DGRIVEPKRAVPREEIK 470
+GRI K A ++K
Sbjct: 79 EGRITNCKLAFVGAKVK 95
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/63 (36%), Positives = 32/63 (50%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRVCLQ 676
K+ GL +E L +F FG I+ V+VV D+ET + +G GFV F + R C
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 677 QIP 685
P
Sbjct: 74 PNP 76
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRI 431
T D L+ + Q+G+++D ++ D ++ RS+GFGF+T+ + M D + ++DGR+
Sbjct: 17 TNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRV 76
Query: 432 VEPKRAVPR 458
+ A R
Sbjct: 77 ITVNEAQSR 85
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +2
Query: 512 GLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
GL +EDL+ FS FG+++ ++ D+E+G+ RG GFV F
Sbjct: 12 GLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTF 54
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRI 431
T D L+ + Q+G+++D ++ D ++ RS+GFGF+T+ + M D + ++DGR+
Sbjct: 17 TNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRV 76
Query: 432 VEPKRAVPR 458
+ A R
Sbjct: 77 ITVNEAQSR 85
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +2
Query: 512 GLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
GL +EDL+ FS FG+++ ++ D+E+G+ RG GFV F
Sbjct: 12 GLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTF 54
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRI 431
T D L+ + Q+G+++D ++ D ++ RS+GFGF+T+ + M D + ++DGR+
Sbjct: 17 TNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRV 76
Query: 432 VEPKRAVPR 458
+ A R
Sbjct: 77 ITVNEAQSR 85
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +2
Query: 512 GLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
GL +EDL+ FS FG+++ ++ D+E+G+ RG GFV F
Sbjct: 12 GLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTF 54
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/58 (37%), Positives = 39/58 (67%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 428
T DSSLK+ + +GE+ + V+ D +T RS+GFGF+++S +++ NN ++DG+
Sbjct: 46 TDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS----CEDSANNAIKEMDGK 99
Score = 48.8 bits (111), Expect = 3e-06
Identities = 19/52 (36%), Positives = 31/52 (59%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYD 652
K+ GL ++ L++ F++FG + +V+ D+ETG+ RG GFV F D
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/58 (37%), Positives = 39/58 (67%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 428
T DSSLK+ + +GE+ + V+ D +T RS+GFGF+++S +++ NN ++DG+
Sbjct: 46 TDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS----CEDSANNAIKEMDGK 99
Score = 48.8 bits (111), Expect = 3e-06
Identities = 19/52 (36%), Positives = 31/52 (59%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYD 652
K+ GL ++ L++ F++FG + +V+ D+ETG+ RG GFV F D
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 49.6 bits (113), Expect = 2e-06
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
K+ GL ++E+ L++ FS+FG + V + DK +G+ RG GFV+F
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
Score = 36.7 bits (81), Expect = 0.014
Identities = 13/38 (34%), Positives = 26/38 (68%)
Frame = +3
Query: 261 DSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 374
+ SLK+ + +GE+ +V + D + RS+GFGF+ +++
Sbjct: 54 EQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAE 91
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 48.8 bits (111), Expect = 3e-06
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGR 428
TT L+ ++EQ+G++VD V+ + RSKG+GFIT+ V QN++P IDGR
Sbjct: 23 TTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQNSKP-IIDGR 80
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGY 649
K+ L +DLR YF FG +V +VV++ G+ +G GF+ F Y
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDY 63
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = +3
Query: 270 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIV 434
LKE + +G+IVD VV+ D ++ S+GFGF+TY + + A +K +DGRI+
Sbjct: 52 LKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRII 107
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/52 (42%), Positives = 30/52 (57%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYD 652
K+ GL + E L+E F +FG IV VV D+E+G RG GFV +D +
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIE 88
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRI 431
T D +L+ + Q+G+++D ++ D +T RS+GFGF+T+ + M D + +DGR
Sbjct: 19 TDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRS 78
Query: 432 VEPKRAVPR 458
+ A R
Sbjct: 79 ITVNEAQSR 87
Score = 40.7 bits (91), Expect = 9e-04
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +2
Query: 512 GLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
GL ++ L F+ +G+++ ++ D+ETG+ RG GFV F
Sbjct: 14 GLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTF 56
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRI 431
T D +L+ + Q+G+++D ++ D +T RS+GFGF+T+ + M D + +DGR
Sbjct: 19 TDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRS 78
Query: 432 VEPKRAVPR 458
+ A R
Sbjct: 79 ITVNEAQSR 87
Score = 40.7 bits (91), Expect = 9e-04
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +2
Query: 512 GLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
GL ++ L F+ +G+++ ++ D+ETG+ RG GFV F
Sbjct: 14 GLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTF 56
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 48.4 bits (110), Expect = 4e-06
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
K+ G+ +E LRE FS +G +V ++ D+ETG+ RG FV F
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTF 82
Score = 45.2 bits (102), Expect = 4e-05
Identities = 20/68 (29%), Positives = 35/68 (51%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 434
T + L+E + ++GE+VD ++ D +T RS+GF F+T++ A + GR +
Sbjct: 45 TDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRI 104
Query: 435 EPKRAVPR 458
A R
Sbjct: 105 RVNYATER 112
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIV 434
TD L+ + ++G+I+D +M + T RS+GFGFIT++ +DE+ + R++
Sbjct: 19 TDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVI 78
Query: 435 EPKRAVPR 458
RA P+
Sbjct: 79 SVNRAEPK 86
Score = 46.4 bits (105), Expect = 2e-05
Identities = 16/48 (33%), Positives = 30/48 (62%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
++ GL ++ + DL FS FG+I+ ++ +++TG+ RG GF+ F
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITF 55
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +2
Query: 512 GLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
GL +EDL+ FS FG+++ ++ D+E+G+ RG GFV F
Sbjct: 12 GLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTF 54
Score = 42.3 bits (95), Expect = 3e-04
Identities = 15/47 (31%), Positives = 30/47 (63%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 395
T D L+ + Q+G+++D ++ D ++ RS+GFGF+T+ + +A
Sbjct: 17 TNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/48 (43%), Positives = 28/48 (58%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
K+ GL D E LR FS++G++ V+ DK TGK +G GFV F
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +3
Query: 231 FYRWTRL*TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRP 410
F R TT L+ + +G++ + +V+ D T +SKG+GF+T+ A
Sbjct: 78 FIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPS 137
Query: 411 HKIDGRIVEPKRAVPREEIKRPE-ASATVKKLFV 509
KIDGR+ + A + + A +++K++V
Sbjct: 138 KKIDGRVTVTQLAASGNQGTGSQIADISMRKIYV 171
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/48 (43%), Positives = 28/48 (58%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
K+ GL D E LR FS++G++ V+ DK TGK +G GFV F
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +3
Query: 231 FYRWTRL*TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRP 410
F R TT L+ + +G++ + +V+ D T +SKG+GF+T+ A
Sbjct: 78 FIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPS 137
Query: 411 HKIDGRIVEPKRAVPREEIKRPE-ASATVKKLFV 509
KIDGR+ + A + + A +++K++V
Sbjct: 138 KKIDGRVTVTQLAASGNQGTGSQIADISMRKIYV 171
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYD 652
K+ GL +E L++ FS+F + V+T+K TG+ RG GFV F D
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISED 83
Score = 31.9 bits (69), Expect = 0.41
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 368
T + SLK+ + + + + VM + T RS+G+GF+ +
Sbjct: 42 TDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNF 79
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 45.6 bits (103), Expect = 3e-05
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRI 431
TTD LK + ++G+I VVMKD + K SKGFGF+ + A A ++ HK D +
Sbjct: 40 TTDDDLKNAFGEYGKITSAVVMKDGEGK-SKGFGFVNFENADDAARAVESLNGHKFDDKE 98
Query: 432 VEPKRAVPREE 464
RA + E
Sbjct: 99 WYVGRAQKKSE 109
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE 437
+D LKE + +G + VM+DP SKG GF+ ++ EA + ++ G+++E
Sbjct: 144 SDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMS----QLSGKMIE 198
Query: 438 PK 443
K
Sbjct: 199 SK 200
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = +2
Query: 500 VVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
V + D EE LRE G +VS +VTD+ETGK +G GF E+
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEY 57
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVD 661
++ L D++ L FS G +V VV+D+ETG+ RG GFV+ + V+
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVN 262
Score = 37.9 bits (84), Expect = 0.006
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Frame = +3
Query: 267 SLKEFYEQWG--EIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVE 437
+L +EQ G EI +V+ +D T +S+GFGF+T S ++A + +++GR +
Sbjct: 128 ALAMLFEQAGTVEISEVIYNRD--TDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLT 185
Query: 438 PKRAVPREEIKRPEASATV 494
RA PR RPE V
Sbjct: 186 VNRAAPRG--SRPERQPRV 202
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +3
Query: 270 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 395
L+ + + G++VD V+ D +T RS+GFGF+ S + V+ A
Sbjct: 223 LERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVA 264
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRVCLQ 676
KV GL D +E + ++F +G+I+ +++DK T + +G GFV F R C
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 677 QIP 685
P
Sbjct: 78 STP 80
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/58 (31%), Positives = 35/58 (60%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 428
T ++ + + ++G+I++ V++ D T+RSKG+GF+T+ A A + I+GR
Sbjct: 28 THKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGR 85
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/48 (41%), Positives = 32/48 (66%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 398
TT+ L E + + G++V+ ++ D + RSKGFGF+T++ A DEAQ
Sbjct: 45 TTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASA---DEAQ 89
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVD 661
+V L D++ L + FS G +V VV D+ETG+ RG GFV D ++
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELN 299
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/42 (38%), Positives = 29/42 (69%)
Frame = +3
Query: 270 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 395
L++ + + G++V+ V+ D +T RS+GFGF+T S ++EA
Sbjct: 260 LEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEA 301
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +3
Query: 267 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPK 443
+L +EQ G + V+ + +T +S+GFGF+T S + A + + ++GR++
Sbjct: 165 ALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN 224
Query: 444 RAVPREEIKRPEASATV 494
+A PR RPE + V
Sbjct: 225 KAAPRG--SRPERAPRV 239
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVD 661
K+ L D+ + L F G + V+ ++ET + RG GFV D +
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAE 205
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 44.4 bits (100), Expect = 7e-05
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +3
Query: 261 DSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVE 437
D +L+ + + G++V+ V+ D + RSKGFGF+T S + V +A N+ +DGR +
Sbjct: 262 DMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIR 321
Query: 438 PKRAVPR 458
A R
Sbjct: 322 VSEAEAR 328
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFV 634
K+ L +++ L + F + GN+ V V+ DK TG+ RG GFV
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 264 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD-EAQNNRPHKIDGR 428
+ L + +E G + V V+ D T RS+GFGF+T S A V+ AQ ++ +GR
Sbjct: 113 AQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGR 168
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 44.4 bits (100), Expect = 7e-05
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +3
Query: 261 DSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVE 437
D +L+ + + G++V+ V+ D + RSKGFGF+T S + V +A N+ +DGR +
Sbjct: 270 DMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIR 329
Query: 438 PKRAVPR 458
A R
Sbjct: 330 VSEAEAR 336
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFV 634
K+ L +++ L + F + GN+ V V+ DK TG+ RG GFV
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 264 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD-EAQNNRPHKIDGR 428
+ L + +E G + V V+ D T RS+GFGF+T S A V+ AQ ++ +GR
Sbjct: 113 AQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGR 168
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/50 (42%), Positives = 26/50 (52%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDR 664
L +D E DL E F FG + V V D++TG RG GFV F + R
Sbjct: 220 LSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQR 269
Score = 35.9 bits (79), Expect = 0.025
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRI 431
T + L E + +G + V V D KT S+GFGF+ + A N + D I
Sbjct: 224 TREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLI 283
Query: 432 VEPKRAVPR 458
+ + A PR
Sbjct: 284 LRVEWATPR 292
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/43 (46%), Positives = 26/43 (60%)
Frame = +2
Query: 512 GLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
GL D E+L+ F +G I SVV DK+TG+ +G GFV F
Sbjct: 169 GLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLF 211
Score = 42.3 bits (95), Expect = 3e-04
Identities = 26/83 (31%), Positives = 38/83 (45%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 434
TT +LK +E +GEI + V+ D T R+KGFGF+ + A N ++ R V
Sbjct: 174 TTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYNRTV 233
Query: 435 EPKRAVPREEIKRPEASATVKKL 503
A P K E V+ +
Sbjct: 234 SCLPARPFNSGKPREQQQPVESV 256
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRI 431
TT+ +L++ +EQ+G ++ + ++ D R KGF F+ Y ++ + Q +DGR+
Sbjct: 88 TTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRV 147
Query: 432 VEPKRAVPREEIKR 473
+ + A R ++ R
Sbjct: 148 IFVEEAKTRSDMSR 161
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/56 (32%), Positives = 33/56 (58%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDR 664
K+ + + EE++R YF GN++ V+++ DK TG+++G FV++ DR
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176
Score = 37.1 bits (82), Expect = 0.011
Identities = 13/46 (28%), Positives = 29/46 (63%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 395
T+ ++ ++EQ G +++V ++KD +T + +G F+ Y+ + D A
Sbjct: 132 TEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRA 177
Score = 35.9 bits (79), Expect = 0.025
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN--NRPHKIDG-- 425
T+ ++E + Q+G + DV +M+D + ++S+G GF+ YS A + N + + G
Sbjct: 223 TEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCN 281
Query: 426 -----RIVEPKRAVPRE 461
R EPKR P E
Sbjct: 282 QPLIVRFAEPKRPKPGE 298
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/56 (32%), Positives = 33/56 (58%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDR 664
K+ + + EE++R YF GN++ V+++ DK TG+++G FV++ DR
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176
Score = 37.1 bits (82), Expect = 0.011
Identities = 13/46 (28%), Positives = 29/46 (63%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 395
T+ ++ ++EQ G +++V ++KD +T + +G F+ Y+ + D A
Sbjct: 132 TEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRA 177
Score = 35.9 bits (79), Expect = 0.025
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN--NRPHKIDG-- 425
T+ ++E + Q+G + DV +M+D + ++S+G GF+ YS A + N + + G
Sbjct: 223 TEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCN 281
Query: 426 -----RIVEPKRAVPRE 461
R EPKR P E
Sbjct: 282 QPLIVRFAEPKRPKPGE 298
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 44.0 bits (99), Expect = 9e-05
Identities = 19/44 (43%), Positives = 30/44 (68%)
Frame = +2
Query: 509 AGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
A L +D + LRE+FS+ G I +VSV D++TG +G+ ++EF
Sbjct: 410 ASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF 453
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 509 AGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
A L +IE D+ +F G +V V T+++ G RG G VEF
Sbjct: 302 ANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEF 345
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 264 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 374
++L+E + GEI +V V D T SKG ++ +S+
Sbjct: 419 NTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSE 455
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/67 (22%), Positives = 31/67 (46%)
Frame = +3
Query: 264 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 443
+ ++ F+++ GE+VDV + +GFG + ++ + +A + GR +
Sbjct: 311 ADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALEFHGRPLLGREIRLD 370
Query: 444 RAVPREE 464
A R E
Sbjct: 371 IAQERGE 377
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +2
Query: 533 EEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFV 634
EE+L E+FSTFG I V +V DKET + RG+ ++
Sbjct: 274 EEELMEHFSTFGKISEVHLVLDKETKRSRGIAYI 307
Score = 34.3 bits (75), Expect = 0.077
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 368
T+ L E + +G+I +V ++ D +TKRS+G +I Y
Sbjct: 273 TEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILY 309
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIV 434
T S L + + + G +VDV ++ D T RS+GFGF+T EA Q +I GR V
Sbjct: 128 TSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTV 187
Query: 435 E 437
+
Sbjct: 188 K 188
Score = 36.3 bits (80), Expect = 0.019
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXV 658
KV L ++ + L++ F ++ V+ ++ TG+ RG GF+ F+ + V
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENV 273
Score = 33.9 bits (74), Expect = 0.10
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIV 434
T LK+ + ++ V+ + T RS+GFGFI++ A V A +++GR +
Sbjct: 231 TSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRAL 290
Query: 435 EPKRAVPREE 464
A RE+
Sbjct: 291 RLNLASEREK 300
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/86 (31%), Positives = 45/86 (52%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE 437
TD+ LK + ++GEI VVMKD + K S+ FGF+ + +A EA K++G +V+
Sbjct: 131 TDADLKRLFGEFGEITSAVVMKDGEGK-SRRFGFVNFEKA----EAAVTAIEKMNGVVVD 185
Query: 438 PKRAVPREEIKRPEASATVKKLFVLD 515
K ++ + +K F L+
Sbjct: 186 EKELHVGRAQRKTNRTEDLKAKFELE 211
Score = 35.5 bits (78), Expect = 0.033
Identities = 23/72 (31%), Positives = 33/72 (45%)
Frame = +2
Query: 461 RD*KTRS*CHR*KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
RD KTR + + L ++ L E FS FG I S V+ G +G+GFVEF
Sbjct: 215 RDMKTRKGMN---LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSN-GISKGVGFVEF 270
Query: 641 DGYDXVDRVCLQ 676
+ + L+
Sbjct: 271 STSEEASKAMLK 282
Score = 35.1 bits (77), Expect = 0.044
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = +2
Query: 500 VVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFD 643
V L + + DL+ F FG I S V+ D E GK R GFV F+
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGE-GKSRRFGFVNFE 167
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +3
Query: 261 DSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVE 437
D +L+ + + G++V+ V+ D + RSKGFGF+TY + V A ++ +DGR +
Sbjct: 217 DMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIR 276
Query: 438 PKRAVPR 458
A R
Sbjct: 277 VSEAEAR 283
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRVCLQ 676
K+ L +++ L + F + GN+ V V+ DK TG+ RG GFV V+ Q
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 264 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD-EAQNNRPHKIDGR 428
+ L + +E G + V V+ D T RS+GFGF+T S V+ AQ +++DGR
Sbjct: 105 AQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGR 160
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = +2
Query: 512 GLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
G D +E+L+ F ++G I SVV DK+TG+ +G GFV F
Sbjct: 414 GFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMF 456
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 434
TT +LK +E +GEI + V+ D T R KG+GF+ + EA ++ RIV
Sbjct: 419 TTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPEKRMYNRIV 478
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 434
TT L + ++G++VDV + +D +T S+GF F+ Y DEA + ++DGR+V
Sbjct: 27 TTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK---DEA-HKAVERLDGRVV 82
Query: 435 E 437
+
Sbjct: 83 D 83
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 434
TT L + ++G++VDV + +D +T S+GF F+ Y DEA + ++DGR+V
Sbjct: 27 TTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK---DEA-HKAVERLDGRVV 82
Query: 435 E 437
+
Sbjct: 83 D 83
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/60 (31%), Positives = 39/60 (65%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 434
T++ +L+ +E +GE+V+V ++ D +KRSKG+ F+ Y+ +EA +++G+I+
Sbjct: 293 TSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYT----TEEAAGTALKEMNGKII 348
Score = 36.3 bits (80), Expect = 0.019
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
K+ GL E+ LR F FG +V V ++ DK + + +G F+E+
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEY 330
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVS-VSVVTDKETGKKRGLGFVEFDGYDXVD 661
L D++E+ L + FS FG I S ++ D +TG RG GF+ +D ++ D
Sbjct: 119 LDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASD 168
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 315 VMKDPKTKRSKGFGFITYSQAHMVDEA 395
+M+DP T S+GFGFI+Y D A
Sbjct: 144 IMRDPDTGNSRGFGFISYDSFEASDAA 170
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF-DGYDXVD 661
L+ D +EDLR+ F FG + + + D TG RG GFV+F D D D
Sbjct: 43 LRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAAD 92
Score = 31.5 bits (68), Expect = 0.54
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +3
Query: 270 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 434
L++ +EQ+G + D+ + +D T +GFGF+ + +A+ H +DG ++
Sbjct: 52 LRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAK----HHMDGYLL 102
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRI 431
TT L+ + Q+GE+ D V+ D + SKGFGF+ Y+ + K +DG +
Sbjct: 67 TTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWV 126
Query: 432 VEPKRAVPREE 464
+ + A PRE+
Sbjct: 127 IFAEYARPREQ 137
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 509 AGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
+GL + E LR F+ FG + VVTD+ +G +G GFV +
Sbjct: 61 SGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRY 104
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = +2
Query: 434 RAKTSSSKGRD*KTRS*CHR*KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 613
R ++ S +GR +R ++ L+ D +EDLR F FG + + + D TG
Sbjct: 17 RGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGD 76
Query: 614 KRGLGFVEF 640
RG GF++F
Sbjct: 77 PRGFGFIQF 85
Score = 32.7 bits (71), Expect = 0.23
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +3
Query: 270 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 434
L+ +EQ+G + D+ + +D T +GFGFI + EA+ H++DG ++
Sbjct: 53 LRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAK----HQMDGYLL 103
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +2
Query: 509 AGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
+ L +EED+R++F G + S+ ++ K+TGK RGL + +F
Sbjct: 656 SNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADF 699
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +2
Query: 509 AGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
+ L +EED+R++F G + S+ ++ K+TGK RGL + +F
Sbjct: 656 SNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADF 699
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/51 (43%), Positives = 28/51 (54%)
Frame = +2
Query: 500 VVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYD 652
V L + + L++ F FGNIVS V T E GK RG GFV+F+ D
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVAT-LEDGKSRGYGFVQFEQED 163
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDR 664
L D+ E+ LRE F+ FG IVS+++ D E RG FV FD + R
Sbjct: 208 LDADVSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARR 256
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +2
Query: 527 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
+ EE+LR++FS G I S ++ D E GK +G GFV F
Sbjct: 315 VTEEELRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCF 351
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 371
T+ L++ + Q G I +M D K K SKGFGF+ +S
Sbjct: 316 TEEELRKHFSQCGTITSTKLMCDEKGK-SKGFGFVCFS 352
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 41.5 bits (93), Expect = 5e-04
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
++ GL D+ E L F +G I ++ ++TG+ RG GF+ F
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITF 60
Score = 40.7 bits (91), Expect = 9e-04
Identities = 17/68 (25%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIV 434
T+ L+ ++++G+I + +M T R +GFGFIT++ D+A ++ ++ +++
Sbjct: 24 TERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVI 83
Query: 435 EPKRAVPR 458
+A P+
Sbjct: 84 SVNKAEPK 91
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 41.5 bits (93), Expect = 5e-04
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
++ GL D+ E L F +G I ++ ++TG+ RG GF+ F
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITF 60
Score = 40.7 bits (91), Expect = 9e-04
Identities = 17/68 (25%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIV 434
T+ L+ ++++G+I + +M T R +GFGFIT++ D+A ++ ++ +++
Sbjct: 24 TERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVI 83
Query: 435 EPKRAVPR 458
+A P+
Sbjct: 84 SVNKAEPK 91
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 401
TDS L E + Q G++V V V +D T+RS G+G++ Y+ A N
Sbjct: 57 TDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
L + + ++ LRE+F+ FG I S V+ D +G RG GFV F
Sbjct: 334 LDESVTDDKLREHFAPFGTITSCKVMRD-PSGVSRGSGFVAF 374
Score = 33.1 bits (72), Expect = 0.18
Identities = 21/83 (25%), Positives = 41/83 (49%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE 437
+D L + + ++G V+M+D + K SKGFGF+ + + D+A ++G+ +
Sbjct: 236 SDEELNKVFGEFGVTTSCVIMRDGEGK-SKGFGFVNFENS---DDAA-RAVDALNGKTFD 290
Query: 438 PKRAVPREEIKRPEASATVKKLF 506
K + K+ E +K+ F
Sbjct: 291 DKEWFVGKAQKKSERETELKQKF 313
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
L + + L E F+ G +VSV V D T + G G+V +
Sbjct: 52 LDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNY 93
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 261 DSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGR 428
D L + +GEIV V+KD T SKG+GF+ Y+ M + A Q ++ +GR
Sbjct: 493 DDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGR 549
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +2
Query: 527 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
+E++ L FS+FG IV V+ D+ TG +G GFV++
Sbjct: 491 LEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKY 528
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 261 DSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGR 428
D L + +GEIV V+KD T SKG+GF+ Y+ M + A Q ++ +GR
Sbjct: 493 DDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGR 549
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +2
Query: 527 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
+E++ L FS+FG IV V+ D+ TG +G GFV++
Sbjct: 491 LEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKY 528
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 404
T+ L + Q+GEIVDV +++D T +SKGF F+ Y A +N
Sbjct: 48 TEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDN 96
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI-DGRIV 434
T+ L++ + + G++ DV ++ DP T+ S+GFGFI+ + + H + GR++
Sbjct: 87 TERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVI 146
Query: 435 EPKRA 449
++A
Sbjct: 147 TVEKA 151
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 40.7 bits (91), Expect = 9e-04
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +2
Query: 509 AGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF-DGYD 652
+ L +D +++LR +FS G + V V TD+ETG RG +++ G+D
Sbjct: 488 SSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFD 536
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +3
Query: 270 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 449
L+ + + GE+ V V D +T S+GF +I + DEA +I G + + +
Sbjct: 499 LRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSG--FDEALQLSGSEIGGGNIHVEES 556
Query: 450 VPRE 461
PR+
Sbjct: 557 RPRD 560
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 40.7 bits (91), Expect = 9e-04
Identities = 21/46 (45%), Positives = 27/46 (58%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYD 652
L + ++ + L E FS G IVS V TD G+ RG GFV+FD D
Sbjct: 141 LDKSVDNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTED 185
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/82 (29%), Positives = 38/82 (46%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE 437
TD L+E + ++G I VM+DP + SKG GF+ +S A N K+ G
Sbjct: 340 TDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPL 398
Query: 438 PKRAVPREEIKRPEASATVKKL 503
R+E +R + A ++
Sbjct: 399 YVALAQRKEERRAKLQAQFSQM 420
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/51 (39%), Positives = 26/51 (50%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRV 667
L + +E LRE F+ FG I S V+ D +G +G GFV F RV
Sbjct: 335 LDDTVTDEKLRELFAEFGTITSCKVMRD-PSGTSKGSGFVAFSAASEASRV 384
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIV 434
TDS L +++ + ++V V V +D T S G+G++ YS ++A + ++G+++
Sbjct: 58 TDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMI 117
Score = 34.3 bits (75), Expect = 0.077
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 368
TTD LK + Q+G I VVM+D K S+ FGF+ +
Sbjct: 236 TTDDELKTTFGQYGSISSAVVMRDGDGK-SRCFGFVNF 272
Score = 31.5 bits (68), Expect = 0.54
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 524 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDR 664
++ + L +YF+ +VSV V D T G G+V + D ++
Sbjct: 56 NVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEK 102
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/51 (43%), Positives = 27/51 (52%)
Frame = +2
Query: 488 HR*KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
HR K+ GL + E L F +G I +VV DK TGK +G GFV F
Sbjct: 103 HR-KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMF 152
Score = 35.9 bits (79), Expect = 0.025
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 428
TT +L +E +GEI + V+ D T ++KGFGF+ + EA +I R
Sbjct: 115 TTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNR 172
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/51 (43%), Positives = 27/51 (52%)
Frame = +2
Query: 488 HR*KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
HR K+ GL + E L F +G I +VV DK TGK +G GFV F
Sbjct: 103 HR-KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMF 152
Score = 35.9 bits (79), Expect = 0.025
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 428
TT +L +E +GEI + V+ D T ++KGFGF+ + EA +I R
Sbjct: 115 TTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNR 172
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +2
Query: 527 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDR 664
++E L FS G +VSV V+ +K TG+ G GF+EF + +R
Sbjct: 35 VDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAER 80
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 515 LKQDIEEEDLREYFST-FGNIVSVSVVTDKETGKKRGLGFVEF 640
L D+ + L+E F + ++ VVTD TG+ +G GFV+F
Sbjct: 123 LAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKF 165
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 258 TDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 374
TD L+E F + + V+ DP T RSKG+GF+ +++
Sbjct: 128 TDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAE 167
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 261 DSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 368
++ L + Q GE+V V V+++ T + +G+GFI +
Sbjct: 37 ENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEF 72
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 530 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDR 664
E+EDL FS FG +VS V+ D +TG F+EF+ + ++
Sbjct: 255 EDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQ 299
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
KV L + + LR +FS FG IVS V+ D++TG+ R F+ F
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSF 260
Score = 36.3 bits (80), Expect = 0.019
Identities = 21/76 (27%), Positives = 39/76 (51%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 434
T L+ + ++G IV V+ D KT R++ F F++++ D A + +G
Sbjct: 223 TQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS-----FNGTQY 277
Query: 435 EPKRAVPREEIKRPEA 482
E +R + RE I++ E+
Sbjct: 278 EGRRIIVREGIEKSES 293
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 503 VCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFV 634
VC + + + L + F FG ++SV V + +TG+ RG G+V
Sbjct: 112 VC-NIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYV 154
Score = 31.1 bits (67), Expect = 0.72
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +3
Query: 264 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIT 365
+ L + ++ +G ++ V V ++P+T S+G G++T
Sbjct: 122 AQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVT 155
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 39.5 bits (88), Expect = 0.002
Identities = 29/82 (35%), Positives = 43/82 (52%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 434
TTD SL++ + + ++ KD +T+R KGFGFIT+ D+AQ ++G+IV
Sbjct: 82 TTDQSLRQLFAPFARLI-----KDQQTQRPKGFGFITFESE---DDAQ-KALKALNGKIV 132
Query: 435 EPKRAVPREEIKRPEASATVKK 500
R + E K EA T K
Sbjct: 133 N-GRLIFVETAKEVEAPTTSLK 153
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 524 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF-DGYD 652
D E+LRE F FG + V + D +G+ RG FVEF D YD
Sbjct: 57 DCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYD 100
Score = 37.1 bits (82), Expect = 0.011
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 270 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKR 446
L+E +E++G + DV + +D + + +GF F+ + A+ EAQ + + GR E
Sbjct: 63 LREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGR--EITV 120
Query: 447 AVPREEIKRPE 479
V E KRPE
Sbjct: 121 VVASESRKRPE 131
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI-DGRIV 434
T+ L++ + + G++ DV ++ DP T+ S+GFGFI+ + + H + GR++
Sbjct: 57 TERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVI 116
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
++ C L ++ ++ L + F+ F V+ DK TGK +G GFV F
Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSF 185
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRI 431
+T+ +L + + Q+G+++ V V+ D R KGF ++T+S ++A +DGR+
Sbjct: 32 STEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGRV 91
Query: 432 V 434
V
Sbjct: 92 V 92
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/48 (39%), Positives = 30/48 (62%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
++ L ++ E+DLR+ F +FG++ V V D ETG +G GFV+F
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQF 332
Score = 37.1 bits (82), Expect = 0.011
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +2
Query: 533 EEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
E D+ E+FS G + V ++ D+ + + RG+G+VEF
Sbjct: 195 ERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEF 230
Score = 35.5 bits (78), Expect = 0.033
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN-NRPHKIDGRIV 434
++ L++ +E +G + V V +D +T KGFGF+ +++ A N N +I GR +
Sbjct: 297 SEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALNLNGQLEIAGRAI 355
Query: 435 EPKRAVPREEIKRPEASAT 491
+ + E+ PEA T
Sbjct: 356 KVSAVTDQTEV--PEAGQT 372
Score = 31.9 bits (69), Expect = 0.41
Identities = 11/37 (29%), Positives = 25/37 (67%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 368
T+ + EF+ + G++ DV ++ D ++RS+G G++ +
Sbjct: 194 TERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEF 230
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
L +++ E L+E F FG ++ V + D+ RG G+VEF
Sbjct: 105 LSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEF 146
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +3
Query: 261 DSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRP-HKIDGRIVE 437
++ LKE + +GE++ V + D +G G++ + ++AQ +IDG++V+
Sbjct: 111 EAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVK 170
Query: 438 PKRAV-PREEIKRP 476
+ PR+++ P
Sbjct: 171 ATFTLPPRQKVSSP 184
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
L +++ E L+E F FG ++ V + D+ RG G+VEF
Sbjct: 105 LSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEF 146
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +3
Query: 261 DSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRP-HKIDGRIVE 437
++ LKE + +GE++ V + D +G G++ + ++AQ +IDG++V+
Sbjct: 111 EAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVK 170
Query: 438 PKRAV-PREEIKRP 476
+ PR+++ P
Sbjct: 171 ATFTLPPRQKVSSP 184
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +3
Query: 264 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDG 425
+ L++ +E++G + D+ + ++ T +GFGF+ Y A EA HK+ G
Sbjct: 61 NDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIG 114
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
L D DLR+ F FG + + + + TG+ RG GFV++
Sbjct: 54 LPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKY 95
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS---QAHMVDEAQNNRPHKIDG 425
T++ LK + +GEI +V ++KD KRSKG+ FI ++ A + E + R + +G
Sbjct: 51 TSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMY--NG 108
Query: 426 RIV 434
R++
Sbjct: 109 RMI 111
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGR 428
T + S++ + ++GE+ D ++ D +T RSKGF F+T+ + A ++DGR
Sbjct: 55 TDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQELDGR 113
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 512 GLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYD 652
GL +E+ + F+ FG + ++ D+ETG+ +G FV F D
Sbjct: 50 GLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDED 96
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRV 667
L+Q ++E + F+ G S V+ +K TG+ G GF+EF + +RV
Sbjct: 67 LQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERV 117
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 515 LKQDIEEEDLREYF-STFGNIVSVSVVTDKETGKKRGLGFVEF 640
L ++ + L + F + +G++ VV D+ TG+ +G GFV F
Sbjct: 161 LAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRF 203
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 258 TDSSLKEFYEQ-WGEIVDVVVMKDPKTKRSKGFGFITYS 371
TD L + ++ +G + V+ D T RSKG+GF+ ++
Sbjct: 166 TDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFA 204
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
K+ L ++ E LR+ F FG + V + D ETG+ +G GF++F
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
Score = 35.5 bits (78), Expect = 0.033
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +2
Query: 533 EEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
E D+ E+FS G + V ++ D+ + + +G+G++EF
Sbjct: 181 ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEF 216
Score = 34.7 bits (76), Expect = 0.058
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ--NNRPHKIDGRI 431
++ L++ +E +G + V + DP+T + KGFGFI + Q AQ N +I GR
Sbjct: 277 SELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRT 336
Query: 432 VE 437
++
Sbjct: 337 IK 338
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 368
T+ + EF+ + G++ DV ++ D ++RSKG G+I +
Sbjct: 180 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEF 216
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 38.3 bits (85), Expect = 0.005
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +2
Query: 533 EEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFD 643
E ++ +FS FG + V V +K+TGK + GF++F+
Sbjct: 73 ETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFE 109
Score = 36.3 bits (80), Expect = 0.019
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Frame = +3
Query: 261 DSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ---AHMVDEAQNN---RPHKID 422
++ ++ F+ Q+G + V V ++ KT +SK FGFI + A + A N+ H +
Sbjct: 73 ETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAMNDYLLMEHMLK 132
Query: 423 GRIVEPKRAVP 455
++EP+ P
Sbjct: 133 VHVIEPENVKP 143
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +2
Query: 572 IVSVSVVTDKETGKKRGLGFVEFDGYDXVDRV 667
IVSV V+ +K G G GFVEF+ +D D+V
Sbjct: 129 IVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 515 LKQDIEEEDLREYFST-FGNIVSVSVVTDKETGKKRGLGFVEF 640
L D+ + L E FS + ++ + VV D TG+ +G GFV F
Sbjct: 204 LSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRF 246
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +3
Query: 258 TDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRI 431
+D+ L E F E++ + V+ D T RSKG+GF+ + + +A K R
Sbjct: 209 SDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRA 268
Query: 432 VEPKRAVPRE 461
+ A PR+
Sbjct: 269 MRIGPATPRK 278
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +2
Query: 572 IVSVSVVTDKETGKKRGLGFVEFDGYDXVDRV 667
IVSV V+ +K G G GFVEF+ +D D+V
Sbjct: 129 IVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160
Score = 35.1 bits (77), Expect = 0.044
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 500 VVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
+ GL + +EDL++ F+ FG IVSV + K G GFV+F
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGK------GCGFVQF 346
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 515 LKQDIEEEDLREYFST-FGNIVSVSVVTDKETGKKRGLGFVEF 640
L D+ + L E FS + ++ + VV D TG+ +G GFV F
Sbjct: 204 LSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRF 246
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +3
Query: 258 TDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRI 431
+D+ L E F E++ + V+ D T RSKG+GF+ + + +A K R
Sbjct: 209 SDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRA 268
Query: 432 VEPKRAVPRE 461
+ A PR+
Sbjct: 269 MRIGPATPRK 278
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRVC 670
++ GL E +RE +FG + +V D+ETG +G F + D C
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIAC 417
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 395
T+S ++E E +G + ++KD +T SKG+ F Y + D A
Sbjct: 371 TESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRVC 670
++ GL E +RE +FG + +V D+ETG +G F + D C
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIAC 417
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 395
T+S ++E E +G + ++KD +T SKG+ F Y + D A
Sbjct: 371 TESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRVC 670
++ GL E +RE +FG + +V D+ETG +G F + D C
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIAC 417
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 395
T+S ++E E +G + ++KD +T SKG+ F Y + D A
Sbjct: 371 TESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +2
Query: 488 HR*KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFV 634
HR K+ GL D + E L E F +G I V DK +GK +G GF+
Sbjct: 139 HR-KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
Score = 36.7 bits (81), Expect = 0.014
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRI 431
T +L E ++Q+GEI D + D + +SKG+GFI Y A KI R+
Sbjct: 151 TKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRM 209
Score = 31.1 bits (67), Expect = 0.72
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 279 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKRAV 452
F+ ++GEI + + D T R KGF Y + A PHK +G I+ ++A+
Sbjct: 264 FFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL-EEPHKTFEGHILHCQKAI 321
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 622
K+ + + +++ + L +FS FG I + DK TG+ +G
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKG 287
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +2
Query: 488 HR*KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFV 634
HR K+ GL D + E L E F +G I V DK +GK +G GF+
Sbjct: 139 HR-KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
Score = 36.7 bits (81), Expect = 0.014
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRI 431
T +L E ++Q+GEI D + D + +SKG+GFI Y A KI R+
Sbjct: 151 TKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRM 209
Score = 31.1 bits (67), Expect = 0.72
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 279 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKRAV 452
F+ ++GEI + + D T R KGF Y + A PHK +G I+ ++A+
Sbjct: 264 FFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL-EEPHKTFEGHILHCQKAI 321
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 622
K+ + + +++ + L +FS FG I + DK TG+ +G
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKG 287
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +2
Query: 488 HR*KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFV 634
HR K+ GL D + E L E F +G I V DK +GK +G GF+
Sbjct: 139 HR-KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
Score = 36.7 bits (81), Expect = 0.014
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRI 431
T +L E ++Q+GEI D + D + +SKG+GFI Y A KI R+
Sbjct: 151 TKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRM 209
Score = 31.1 bits (67), Expect = 0.72
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 279 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKRAV 452
F+ ++GEI + + D T R KGF Y + A PHK +G I+ ++A+
Sbjct: 264 FFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL-EEPHKTFEGHILHCQKAI 321
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 622
K+ + + +++ + L +FS FG I + DK TG+ +G
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKG 287
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 395
++ LK+ + GE+ +V ++K+P+TK+SKG F+ ++ A
Sbjct: 226 SEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRA 271
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +2
Query: 500 VVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
+ GL D+ EEDL + FS FG +VSV + K G GFV+F
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGK------GCGFVQF 369
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 527 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
++E L FS + SV V+ +K+T + G GFVEF
Sbjct: 130 MDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEF 167
Score = 31.1 bits (67), Expect = 0.72
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 515 LKQDIEEEDLREYFS-TFGNIVSVSVVTDKETGKKRGLGFVEF 640
L D+ + L E F+ + ++ VV D TG+ +G GFV F
Sbjct: 220 LAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRF 262
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 572 IVSVSVVTDKETGKKRGLGFVEFDGYDXVDRV 667
IVS+ V+ +K G G GFVEF+ +D D+V
Sbjct: 131 IVSLKVIRNKHNGSSEGYGFVEFESHDVADKV 162
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +2
Query: 500 VVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
+ GL + +EDL++ FS FG IVSV + K G GFV+F
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGK------GCGFVQF 348
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 515 LKQDIEEEDLREYFST-FGNIVSVSVVTDKETGKKRGLGFVEF 640
L D+ + L E FS + ++ + VV D TG+ +G GFV F
Sbjct: 206 LAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRF 248
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +3
Query: 258 TDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRI 431
+D+ L E F E++ + V+ D T RSKG+GF+ + + +A K R
Sbjct: 211 SDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRA 270
Query: 432 VEPKRAVPRE 461
+ A PR+
Sbjct: 271 MRIGPATPRK 280
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFD 643
L I+ + L E FS+FG I+S V D TG+ +G GFV+F+
Sbjct: 143 LDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFE 184
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/81 (28%), Positives = 37/81 (45%)
Frame = +3
Query: 261 DSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEP 440
D LKE + ++G + VM +P+ S+GFGF+ YS A + K+ GR
Sbjct: 345 DEKLKEMFSEYGNVTSSKVMLNPQGM-SRGFGFVAYSNPEEALRALSEMNGKMIGRKPLY 403
Query: 441 KRAVPREEIKRPEASATVKKL 503
R+E +R A ++
Sbjct: 404 IALAQRKEDRRAHLQALFSQI 424
Score = 31.1 bits (67), Expect = 0.72
Identities = 20/73 (27%), Positives = 37/73 (50%)
Frame = +3
Query: 261 DSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEP 440
+ +L E + +G I+ V D T RSKG+GF+ + + +E+ K++G ++
Sbjct: 149 NKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEK----EESAQAAIDKLNGMLMND 203
Query: 441 KRAVPREEIKRPE 479
K+ I+R E
Sbjct: 204 KQVFVGHFIRRQE 216
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +2
Query: 527 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRV 667
++E L F+ G +VS V+ +K+TG+ G GF+EF + +RV
Sbjct: 73 MDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERV 119
Score = 30.7 bits (66), Expect = 0.95
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 515 LKQDIEEEDLREYF-STFGNIVSVSVVTDKETGKKRGLGFVEF 640
L D+ + L E F +++ ++ VV D+ TG+ +G GFV F
Sbjct: 162 LAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRF 204
Score = 30.7 bits (66), Expect = 0.95
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 395
TD LK + Q+GEIV V K P KR GF+ +S+ +EA
Sbjct: 273 TDDHLKNVFSQYGEIVHV---KIPAGKRC---GFVQFSEKSCAEEA 312
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = +3
Query: 294 GEIVDVVVMKDPKTKRSKGFGFI---TYSQAHMVDEAQNNRP 410
GE+V V+++ +T + +G+GFI +++ A V + NN P
Sbjct: 86 GEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAP 127
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +2
Query: 527 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRV 667
++E L F+ G +VS V+ +K+TG+ G GF+EF + +RV
Sbjct: 73 MDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERV 119
Score = 30.7 bits (66), Expect = 0.95
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 515 LKQDIEEEDLREYF-STFGNIVSVSVVTDKETGKKRGLGFVEF 640
L D+ + L E F +++ ++ VV D+ TG+ +G GFV F
Sbjct: 162 LAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRF 204
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = +3
Query: 294 GEIVDVVVMKDPKTKRSKGFGFI---TYSQAHMVDEAQNNRP 410
GE+V V+++ +T + +G+GFI +++ A V + NN P
Sbjct: 86 GEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAP 127
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 374
TD LK + Q+GEIV V K P KR GF+ +S+
Sbjct: 273 TDDHLKNVFSQYGEIVHV---KIPAGKRC---GFVQFSE 305
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFD 643
+ ++ E+++L F FG ++S V DK TG + GF+ +D
Sbjct: 346 IPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYD 388
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 261 DSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 401
D L ++ +G+++ V D T SK FGFI+Y A N
Sbjct: 352 DQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 398
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFD 643
+ ++ E+++L F FG ++S V DK TG + GF+ +D
Sbjct: 337 IPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYD 379
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 261 DSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 401
D L ++ +G+++ V D T SK FGFI+Y A N
Sbjct: 343 DQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 389
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 395
T L+ + + G++V V + P T +S GFGF+T+S V+ A
Sbjct: 189 TKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAA 234
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = +2
Query: 500 VVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
+ G+ D+ +EDLR+ FS FG +VSV + K G GFV+F
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGK------GCGFVQF 363
Score = 34.3 bits (75), Expect = 0.077
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 500 VVCAGLKQDIEEEDLREYFST-FGNIVSVSVVTDKETGKKRGLGFVEF 640
V L D+ + L E FS + ++ S VV D TG+ +G GFV F
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRF 251
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +3
Query: 261 DSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 404
++ L + GE+ V V+++ T +S+G+GF+ + +E N
Sbjct: 121 ETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQN 168
Score = 29.1 bits (62), Expect = 2.9
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = +3
Query: 258 TDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ--------NNRP 410
TD L E F +++ + V+ D T RSKG+GF+ + + A +NR
Sbjct: 214 TDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQ 273
Query: 411 HKIDGRIVEPKRAVPREE 464
++ I PKRA+ ++
Sbjct: 274 MRVG--IATPKRAIANQQ 289
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 37.5 bits (83), Expect = 0.008
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +3
Query: 240 WTRL*TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHK 416
WT T SL + + G++V V+ D T RS+G+GF+ Y S+A M ++ +
Sbjct: 186 WT---VTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFE 242
Query: 417 IDGRIV 434
++GR +
Sbjct: 243 LEGRAI 248
Score = 35.1 bits (77), Expect = 0.044
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFV 634
K+ L + E L F G++V VV D +TG+ RG GFV
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFV 223
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFV 634
K+ L +++ L + F N V V+ +++TG+ RG FV
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFV 131
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 36.7 bits (81), Expect = 0.014
Identities = 23/83 (27%), Positives = 40/83 (48%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE 437
TD L + Q+G + VVVM+D RS+GFGF+ + +A + + G +
Sbjct: 214 TDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAMES----LCGLQLG 268
Query: 438 PKRAVPREEIKRPEASATVKKLF 506
K+ + +K+ E +K+ F
Sbjct: 269 SKKLFVGKALKKDERREMLKQKF 291
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
L + + E LRE F +G IVS V+ E G+ +G GFV F
Sbjct: 311 LSESMNETRLREIFGCYGQIVSAKVMC-HENGRSKGFGFVCF 351
Score = 35.1 bits (77), Expect = 0.044
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFD 643
L I L F FG+I+S VV +E G+ +G GFV+FD
Sbjct: 119 LDSSITSSCLERMFCPFGSILSCKVV--EENGQSKGFGFVQFD 159
Score = 34.3 bits (75), Expect = 0.077
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Frame = +3
Query: 261 DSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVE 437
++ L+E + +G+IV VM + RSKGFGF+ +S +A+ +DG+ +
Sbjct: 317 ETRLREIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIV 375
Query: 438 PKRAVPREE-IKR 473
+ A +E+ IKR
Sbjct: 376 VRVAERKEDRIKR 388
Score = 30.7 bits (66), Expect = 0.95
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFD 643
L D+ E+DL + FS +VSV + + TGK ++ FD
Sbjct: 28 LSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFD 70
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 36.3 bits (80), Expect = 0.019
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 509 AGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFV 634
+ L + D+ FSTFG + V+V+ D+ T + RG+ FV
Sbjct: 62 SNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFV 103
Score = 35.1 bits (77), Expect = 0.044
Identities = 21/81 (25%), Positives = 39/81 (48%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE 437
T+S + + +G++ V V+KD T++S+G F+ Y D A+ R +D +I+
Sbjct: 69 TNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSRE--DAAKAAR--SMDAKILN 124
Query: 438 PKRAVPREEIKRPEASATVKK 500
++ AS +KK
Sbjct: 125 GRKLTVSIAADNGRASEFIKK 145
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 36.3 bits (80), Expect = 0.019
Identities = 12/48 (25%), Positives = 30/48 (62%)
Frame = +2
Query: 500 VVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFD 643
++ +G+ ++ +EED+ F FG I ++++ D+ +G +G +E++
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYE 144
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
L ++ + L + FS F + V+ D++TG+ RG GFV F
Sbjct: 151 LSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSF 192
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 401
TD++L + + + D VM D KT RS+GFGF+++ A N
Sbjct: 156 TDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 203
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = +3
Query: 315 VMKDPKTKRSKGFGFITYS---QAHMVDEAQNNRPHKIDGRI 431
V+++ + +R KGFGF+ Y+ +A + + N +P+ + +I
Sbjct: 292 VIEEVRVQRDKGFGFVRYNTHPEAALAIQMGNTQPYLFNRQI 333
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFD 643
L E+ LRE S +G I ++ +V TG RG GFVE++
Sbjct: 71 LSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYE 113
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGR 428
TT+ +L+E ++G I ++ +++ T S+G+GF+ Y + A + H IDGR
Sbjct: 75 TTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSLIDGR 133
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 35.9 bits (79), Expect = 0.025
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRVC 670
++ GL E +RE +FG + ++V D+ETG +G F + D C
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIAC 433
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 395
T+ ++E E +G + ++KD +T SKG+ F Y + D A
Sbjct: 387 TEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIA 432
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 401
TD++L + + + D VM D KT RS+GFGF+++ A N
Sbjct: 160 TDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 207
Score = 35.1 bits (77), Expect = 0.044
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
L ++ + L + FS F + V+ D++TG+ RG GFV F
Sbjct: 155 LSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSF 196
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 35.5 bits (78), Expect = 0.033
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFD 643
+ ++ +++L F +FG ++S V DK TG + GFV +D
Sbjct: 356 IPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYD 398
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 35.1 bits (77), Expect = 0.044
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 512 GLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFD 643
G + E L++ FS FG + +V ++ ++ T + G G+V F+
Sbjct: 64 GFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFN 107
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 35.1 bits (77), Expect = 0.044
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 512 GLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFD 643
G + E L++ FS FG + +V ++ ++ T + G G+V F+
Sbjct: 83 GFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFN 126
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 35.1 bits (77), Expect = 0.044
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ-AHMVDEAQNNRPHKIDGRI 431
T+ LKE +++ GE+ +V KR FGF+ Y++ + + ++ ++++G+
Sbjct: 303 TSTEQLKELFQRHGEVTKIVTPPGKGGKRD--FGFVHYAERSSALKAVKDTERYEVNGQP 360
Query: 432 VEPKRAVPREEIKRPEAS 485
+E A P+ E K +S
Sbjct: 361 LEVVLAKPQAERKHDPSS 378
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +3
Query: 261 DSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 395
+ L++ E+ GEI +V +MKD + SKG+ F+ + + +A
Sbjct: 129 EEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKA 173
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 34.7 bits (76), Expect = 0.058
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
K+ A + + E D+R+ F +GN+ + + DK TG++ F+++
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKY 158
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 34.7 bits (76), Expect = 0.058
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 368
TD LK+ + ++G+I VVMKD ++ S+ FGF+ +
Sbjct: 237 TDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNF 272
Score = 33.9 bits (74), Expect = 0.10
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +3
Query: 261 DSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 428
D LKE + ++G + VM + + S+GFGF+ YS A K+ GR
Sbjct: 341 DEKLKEMFSEYGNVTSCKVMMNSQGL-SRGFGFVAYSNPEEALLAMKEMNGKMIGR 395
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/73 (23%), Positives = 35/73 (47%)
Frame = +3
Query: 261 DSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEP 440
+ +L E + +G I+ V D RSKG+GF+ + + +E K++G ++
Sbjct: 145 NKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEK----EETAQAAIDKLNGMLLND 199
Query: 441 KRAVPREEIKRPE 479
K+ ++R +
Sbjct: 200 KQVFVGHFVRRQD 212
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 34.3 bits (75), Expect = 0.077
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIV 434
T+ +++ + +G ++ V ++ D ++ R K +GF+T+S D+A + K I GR V
Sbjct: 19 TEEAVRRVFSIYGSVLTVKIVND-RSVRGKCYGFVTFSNRRSADDAIEDMDGKSIGGRAV 77
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 34.3 bits (75), Expect = 0.077
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 533 EEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
++ L +F+ FG ++ +VTD TG+ G ++EF
Sbjct: 529 KDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEF 564
Score = 30.7 bits (66), Expect = 0.95
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 395
T SL + ++GE++ ++ DP T + G +I +++ + A
Sbjct: 528 TKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENA 573
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 34.3 bits (75), Expect = 0.077
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 622
K+ + + DI+ + L E+FS FG I + DK TG+ +G
Sbjct: 228 KIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKG 269
Score = 33.9 bits (74), Expect = 0.10
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRI 431
T SL + ++Q+GEI D + D + +SKG+GFI + A KI R+
Sbjct: 139 TKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRM 197
Score = 32.3 bits (70), Expect = 0.31
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 270 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKR 446
L EF+ ++GEI + + D T R KGF Y +A PHK +G ++ +
Sbjct: 243 LLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKAL-EEPHKTFEGHVLHCHK 301
Query: 447 A 449
A
Sbjct: 302 A 302
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 33.9 bits (74), Expect = 0.10
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 500 VVCAGLKQDIEEEDLREYF-STFGNIVSVSVVTDKETGKKRGLGFVEF 640
V L D+ + L E F + + ++ VV D+ TG+ +G GFV F
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRF 222
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 500 VVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 610
+ + Q + E+DL+ F FG +V V + K G
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCG 316
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 258 TDSSLKEFYEQ-WGEIVDVVVMKDPKTKRSKGFGFITYS 371
TD L E ++ + + V+ D T RSKG+GF+ ++
Sbjct: 185 TDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFA 223
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 33.9 bits (74), Expect = 0.10
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 395
T+ LK F GE+ +V +M++ + KG+ F+T+ + EA
Sbjct: 104 TEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEA 149
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 33.9 bits (74), Expect = 0.10
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
L + E ++ F ++G I V +VTD+ T K +G F+E+
Sbjct: 145 LNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEY 186
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 33.5 bits (73), Expect = 0.13
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 371
TD L+ + + G++ ++ +P+T+ S+GF F+T S
Sbjct: 84 TDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMS 121
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 33.5 bits (73), Expect = 0.13
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 371
TD L+ + + G++ ++ +P+T+ S+GF F+T S
Sbjct: 83 TDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMS 120
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +3
Query: 261 DSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRP-HKIDGRIVE 437
+S L + +G+I DV D ++ + FGF+T+ + A +N ++ GR++
Sbjct: 26 ESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNMDGAELYGRVLT 85
Query: 438 PKRAVPREEIKRPE 479
A+P E+IK E
Sbjct: 86 VNYALP-EKIKGGE 98
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +2
Query: 512 GLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
GL ++ E L F FG+I V D+ K R GFV F
Sbjct: 19 GLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTF 61
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +3
Query: 273 KEFYEQWGEIVDVVVMKDP-KTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 443
+EF+ Q+G I +V+++K + +++ GFGFI Y+ +A + GRI+ K
Sbjct: 182 EEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAVEFDGVEFHGRILTVK 239
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRI 431
T L E + +G + V D KT S+GFGF+++ A N + D I
Sbjct: 185 TRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNGYGYDNLI 244
Query: 432 VEPKRAVPREEI 467
+ + + P+ ++
Sbjct: 245 LRVEWSTPKTQL 256
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 395
+D L + Q G ++D+ + +D +T + KGF F Y + D A
Sbjct: 19 SDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYA 64
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 279 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 395
F + G + +V+V+ DP T+ KG F+T++ V +A
Sbjct: 464 FSSKCGAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKA 502
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 258 TDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 368
TD+ L + + D VM D KT RS+GFGF+++
Sbjct: 151 TDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSF 187
Score = 31.1 bits (67), Expect = 0.72
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
L ++ + L FS + V+ D++TG+ RG GFV F
Sbjct: 146 LSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSF 187
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 31.9 bits (69), Expect = 0.41
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFD 643
+ ++ +++L F +FG ++S V DK TG + G + FD
Sbjct: 355 IPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSFD 397
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 31.5 bits (68), Expect = 0.54
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVSVSVV---TDKETGKKRGLGFVEF 640
L ++E L F FG I SV ++ TD+E ++R GFV F
Sbjct: 186 LSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSF 230
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 30.7 bits (66), Expect = 0.95
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 395
TT+ L E + + GEI +++ D TK GF F+ + ++A
Sbjct: 45 TTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDA 91
>At5g09830.1 68418.m01137 BolA-like family protein contains Pfam
profile: PF01722 BolA-like protein
Length = 93
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +1
Query: 337 RDQKDLDLLHILKPIWLMKLKIIGLTKLTEELSSQNEQFQGKRLKDQ 477
++Q + L LKPI L + I G + E+ +EQF+GKRL ++
Sbjct: 4 KEQVEASLTSKLKPIHLEVIDISGGCGSSFEVEVVSEQFEGKRLLER 50
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 533 EEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
EED+ +YFSTFG + V + +KR GFV F
Sbjct: 169 EEDVSDYFSTFGPVQDVRIPYQ----QKRMFGFVTF 200
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +3
Query: 267 SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ----AHMVDEAQN 401
SL + Q+G I+DVV +K PK +G ++T+S+ H V + QN
Sbjct: 29 SLYCLFSQFGRILDVVALKTPKL---RGQAWVTFSEVTAAGHAVRQMQN 74
>At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 422
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +2
Query: 500 VVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEFDGYDXVDRV 667
+ A L D E L E F +FG I + KK +GFV F+ + V V
Sbjct: 277 IFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYPEKKNCIGFVAFENGEAVKNV 332
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 306 DVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 401
D VM D KT RS+GFGF+++ A N
Sbjct: 180 DARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 211
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVS----VSVVTDKETGKKRGLGFVEF 640
L ++ + L + FS F + S V+ D++TG+ RG GFV F
Sbjct: 155 LSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSF 200
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 509 AGLKQDIEEEDLREYFST-FGNIVSVSVVTDKETGKKRGLGFVEF 640
A L + + L+E+F GN+VS V+ + + G GFV F
Sbjct: 194 ANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSF 238
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +2
Query: 497 KVVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
+V L D E D+R+ FS I SV + +KETG+ +G V+F
Sbjct: 263 RVYIGNLAWDTTERDIRKLFSDCV-INSVRLGKNKETGEFKGYAHVDF 309
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 533 EEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVEF 640
EED+ YFSTFG + V + +KR GFV F
Sbjct: 272 EEDVSNYFSTFGPVQDVRIPYQ----QKRMFGFVTF 303
>At5g13655.1 68418.m01588 hypothetical protein
Length = 395
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/51 (23%), Positives = 28/51 (54%)
Frame = +3
Query: 270 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKID 422
L ++ ++W +I+ ++ KD T +S G++ + H + +++R H D
Sbjct: 301 LDKYSDRWQDIILMLTRKDFDTTKSFILGYVLQNSIHSIWRERDDRRHGED 351
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = +3
Query: 255 TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 434
+T+ L + +WG + V V+++ + S+GF FI + + H DG ++
Sbjct: 309 STEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRIEH--DGIVL 366
Query: 435 EPKR 446
+ ++
Sbjct: 367 DGRK 370
>At1g41855.1 68414.m04833 hypothetical protein
Length = 261
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 327 PKTKRSKGFGFITYSQAHMVDEAQNNRPH-KIDGRIVEPKRAVP 455
P+ K KGFG + + + +E++N +PH + GR+ + P
Sbjct: 13 PELKNVKGFGDLELLASKLEEESRNQKPHTRPPGRVHPAPHSTP 56
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 509 AGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGLGFVE 637
A L D + L +YFS+FG I V V TG G +++
Sbjct: 243 ASLPVDDIKSALSKYFSSFGEITRVFVPPSHGTGGSLGYAYID 285
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 294 GEIVDVVVMKDPKTKRSKGFGFITYSQA 377
G + + +DP TK+ KGFGF + A
Sbjct: 227 GHVKSCLRAEDPTTKKPKGFGFYEFESA 254
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +2
Query: 500 VVCAGLKQDIEEEDLREYFSTFGNIVSVSVVTD-KETGKKRGLGFVEFDGYDXVDRVCLQ 676
V + D++ ED+ +FS +G + SV + E+ G+ VEF + V Q
Sbjct: 118 VAASPFSYDVKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTEEDAQNVMKQ 177
Query: 677 QI 682
+
Sbjct: 178 NL 179
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 515 LKQDIEEEDLREYFSTFGNIVSVSV 589
L+ D EE DL+ FS FG+++ +V
Sbjct: 15 LESDTEENDLKNAFSQFGDVIHSNV 39
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,494,598
Number of Sequences: 28952
Number of extensions: 255345
Number of successful extensions: 1078
Number of sequences better than 10.0: 175
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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