Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060648.seq
(436 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 47 1e-06
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 33 0.025
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 32 0.033
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 32 0.044
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 31 0.10
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 30 0.13
SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom... 30 0.13
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 29 0.23
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 28 0.54
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 26 2.2
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 26 2.2
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 26 2.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 3.8
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 25 5.0
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 24 8.8
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 46.8 bits (106), Expect = 1e-06
Identities = 28/68 (41%), Positives = 35/68 (51%)
Frame = +1
Query: 232 MGQF*IDDNALVLVMGSKXXDVPAAPVEQTRFVEDMNXAELATAMDMPEGLINXGNTCYM 411
+G I NA +L+MG+ A P+ VE E + P GLIN GNTCYM
Sbjct: 56 LGSVGIKPNATLLMMGTAGELPTAMPIPAVESVEQ----EESEDDGYPSGLINLGNTCYM 111
Query: 412 NXTVQXLK 435
N TVQ L+
Sbjct: 112 NSTVQMLR 119
Score = 46.4 bits (105), Expect = 2e-06
Identities = 20/53 (37%), Positives = 34/53 (64%)
Frame = +2
Query: 71 VSVKVKWGKEMYPDVEVNTDDEPVLFKAQIFALTGVQPERQKVVCKGVTLRDD 229
+ + ++W + Y D+E+ ++ K Q+++LT V PERQKV+ KG L+DD
Sbjct: 2 IPIAIRWQGKKY-DLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDD 53
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 32.7 bits (71), Expect = 0.025
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 307 PVEQTRFVEDMNXAELATAMDMPEGLINXGNTCYMNXTVQXL 432
P + F E+ E M GL+N GNTC+MN +Q +
Sbjct: 102 PPARILFPEEKLSMEWDNIMPNAPGLVNLGNTCFMNSVLQLM 143
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 32.3 bits (70), Expect = 0.033
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +1
Query: 373 PEGLINXGNTCYMNXTVQXL 432
P GL N GNTCYMN +Q L
Sbjct: 71 PIGLTNLGNTCYMNCVLQCL 90
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 31.9 bits (69), Expect = 0.044
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = +2
Query: 62 MPNVSVKVKWGKEMYPDVEVNTDDEPVLFKAQIFALTGVQPERQKVVCKGVTLRDD 229
M N+S+ +K + V V+++ + K I + ++ ERQ+++ G L+D+
Sbjct: 1 MTNISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDE 56
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 30.7 bits (66), Expect = 0.10
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 358 TAMDMPEGLINXGNTCYMNXTVQ 426
+++D P GL N GN CY+N +Q
Sbjct: 608 SSLDTPIGLENTGNLCYLNSLIQ 630
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 30.3 bits (65), Expect = 0.13
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +1
Query: 379 GLINXGNTCYMNXTVQXL 432
GL N GNTCYMN +Q L
Sbjct: 312 GLSNLGNTCYMNSALQCL 329
>SPBC428.13c |mob1||protein kinase regulator
Mob1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 30.3 bits (65), Expect = 0.13
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 142 YRFIVCIHLHVWVHFLAPFYLH*NVRHFGLFC 47
Y I C H HV V YL+ + +HF FC
Sbjct: 157 YAHIYCSHFHVMVAMELESYLNTSFKHFVFFC 188
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 29.5 bits (63), Expect = 0.23
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 373 PEGLINXGNTCYMNXTVQXL 432
P G IN GN C+MN +Q L
Sbjct: 132 PRGFINTGNICFMNSILQAL 151
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 28.3 bits (60), Expect = 0.54
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 379 GLINXGNTCYMNXTVQXL 432
GL N GN+CYMN +Q +
Sbjct: 280 GLYNLGNSCYMNSALQCM 297
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 26.2 bits (55), Expect = 2.2
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 379 GLINXGNTCYMNXTVQXL 432
GL N G TCYMN +Q L
Sbjct: 231 GLKNQGATCYMNSLLQSL 248
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 26.2 bits (55), Expect = 2.2
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 379 GLINXGNTCYMNXTVQXL 432
GL N G TCYMN +Q L
Sbjct: 214 GLKNQGATCYMNSLLQSL 231
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 2.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 379 GLINXGNTCYMNXTVQXL 432
GL N GN+CY+ T+Q L
Sbjct: 301 GLKNLGNSCYLASTMQSL 318
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 3.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 314 STGAAGTSXSLLPMTSTKALSS 249
ST + GTS S LP TST +S
Sbjct: 321 STSSTGTSSSPLPSTSTSCTTS 342
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 358 TAMDMPEGLINXGNTCYMNXTVQXL 432
T D GL N GNTCY++ + L
Sbjct: 35 TLTDRFYGLTNYGNTCYVSSVLVSL 59
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 24.2 bits (50), Expect = 8.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 96 LPHFTFTETLGISGYFARSPFQKLYLN 16
L H T T G S F +SP + LYLN
Sbjct: 250 LEHILRTNTNG-SKIFTKSPVKNLYLN 275
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,745,378
Number of Sequences: 5004
Number of extensions: 33369
Number of successful extensions: 78
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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