Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060648.seq
(436 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15810| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 5e-13
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.18
SB_16315| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.23
SB_6591| Best HMM Match : UCH (HMM E-Value=0.00022) 31 0.31
SB_43026| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.41
SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25) 30 0.95
SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12) 30 0.95
SB_8927| Best HMM Match : UCH (HMM E-Value=0) 30 0.95
SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_16638| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42) 27 5.0
SB_35368| Best HMM Match : UIM (HMM E-Value=6.3e-06) 27 5.0
SB_21866| Best HMM Match : UCH (HMM E-Value=0) 27 5.0
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_58588| Best HMM Match : COBRA1 (HMM E-Value=0.00012) 27 6.7
SB_997| Best HMM Match : Hexapep (HMM E-Value=6.8e-15) 27 8.8
SB_20219| Best HMM Match : UCH (HMM E-Value=2.7e-06) 27 8.8
SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06) 27 8.8
SB_2637| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_15810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 70.5 bits (165), Expect = 5e-13
Identities = 32/53 (60%), Positives = 40/53 (75%)
Frame = +2
Query: 74 SVKVKWGKEMYPDVEVNTDDEPVLFKAQIFALTGVQPERQKVVCKGVTLRDDT 232
SV VKWGKE + VE+NTD+ P +FKAQ+FAL+ V PERQKV+ KG L+ T
Sbjct: 8 SVNVKWGKEKFGGVELNTDEPPQVFKAQLFALSSVPPERQKVMLKGAVLQGVT 60
Score = 69.7 bits (163), Expect = 1e-12
Identities = 32/57 (56%), Positives = 43/57 (75%)
Frame = +1
Query: 265 VLVMGSKXXDVPAAPVEQTRFVEDMNXAELATAMDMPEGLINXGNTCYMNXTVQXLK 435
+++MGS D+P APV +T F+EDM+ A+LA+A +P GL N GNTCYMN TVQ L+
Sbjct: 61 LMMMGS-VGDIPTAPVRKTVFMEDMSEAQLASAFKLPAGLNNLGNTCYMNATVQCLR 116
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 32.3 bits (70), Expect = 0.18
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 379 GLINXGNTCYMNXTVQXL 432
GL+N GNTCYMN +Q L
Sbjct: 404 GLVNLGNTCYMNSVLQSL 421
>SB_16315| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 31.9 bits (69), Expect = 0.23
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +1
Query: 379 GLINXGNTCYMNXTVQXL 432
GLIN GNTC+MN VQ L
Sbjct: 40 GLINLGNTCFMNCIVQAL 57
>SB_6591| Best HMM Match : UCH (HMM E-Value=0.00022)
Length = 340
Score = 31.5 bits (68), Expect = 0.31
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 379 GLINXGNTCYMNXTVQXL 432
GL+N GNTCYMN +Q L
Sbjct: 124 GLMNIGNTCYMNAALQAL 141
>SB_43026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 31.1 bits (67), Expect = 0.41
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 364 MDMPEGLINXGNTCYMNXTVQXL 432
+ + GL N GNTCY+N T+Q L
Sbjct: 52 LGLVRGLKNLGNTCYLNATLQML 74
>SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)
Length = 1088
Score = 29.9 bits (64), Expect = 0.95
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +1
Query: 379 GLINXGNTCYMNXTVQXL 432
GL N GNTCYMN +Q L
Sbjct: 216 GLRNLGNTCYMNSVLQVL 233
>SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12)
Length = 893
Score = 29.9 bits (64), Expect = 0.95
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +1
Query: 379 GLINXGNTCYMNXTVQXL 432
GL N GNTCYMN +Q L
Sbjct: 697 GLRNLGNTCYMNSVLQCL 714
>SB_8927| Best HMM Match : UCH (HMM E-Value=0)
Length = 316
Score = 29.9 bits (64), Expect = 0.95
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 379 GLINXGNTCYMNXTVQXL 432
GL+N GNTCY N +Q L
Sbjct: 24 GLVNFGNTCYCNSVLQAL 41
>SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 370 MPEGLINXGNTCYMNXTVQXL 432
M GL N GNTC++N VQ L
Sbjct: 114 MGPGLSNLGNTCFLNSVVQVL 134
>SB_16638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 28.3 bits (60), Expect = 2.9
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 379 GLINXGNTCYMNXTVQXL 432
GL N GNTC+MN +Q L
Sbjct: 223 GLANLGNTCFMNSGLQCL 240
>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
Length = 1712
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 379 GLINXGNTCYMNXTVQXL 432
GL N GNTC+MN +Q L
Sbjct: 465 GLENLGNTCFMNAGLQCL 482
>SB_35368| Best HMM Match : UIM (HMM E-Value=6.3e-06)
Length = 362
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 325 FVEDMNXAELATAMDMPEGLINXGNTCYMNXTVQ 426
FV+ +N + P G N GNTC+ + +Q
Sbjct: 219 FVDPVNPYDRKRVEGTPVGFKNVGNTCWFSAVIQ 252
>SB_21866| Best HMM Match : UCH (HMM E-Value=0)
Length = 2165
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 379 GLINXGNTCYMNXTVQXL 432
GL N G TCYMN +Q L
Sbjct: 1257 GLKNAGATCYMNSVIQQL 1274
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 27.1 bits (57), Expect = 6.7
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +3
Query: 123 IQTMNRYCSRRRYLH*QGSSQRDKKSFAKESHYG 224
I+T+NR SR LH ++RD K F K+SH G
Sbjct: 351 IRTLNRR-SRLFKLHYINLNRRDTKPFDKKSHSG 383
>SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2578
Score = 27.1 bits (57), Expect = 6.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 379 GLINXGNTCYMNXTVQXL 432
GL N GNTC++N +Q L
Sbjct: 1950 GLKNHGNTCFINAIIQCL 1967
>SB_58588| Best HMM Match : COBRA1 (HMM E-Value=0.00012)
Length = 421
Score = 27.1 bits (57), Expect = 6.7
Identities = 12/50 (24%), Positives = 20/50 (40%)
Frame = -2
Query: 423 HCRIHVTSVTXVDETLWHIHGCSQFSXIHVFDKTCLFHWCCWHVXXFTAH 274
H H + ++ + + C +H DK +FH W+V AH
Sbjct: 178 HLAHHFMHMMVSNKVAFKLAWCFMLHLLHQKDKAAVFHALPWYVSPCQAH 227
>SB_997| Best HMM Match : Hexapep (HMM E-Value=6.8e-15)
Length = 916
Score = 26.6 bits (56), Expect = 8.8
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 77 VKVKWGKEMYPDVEVNTDDEPVLFKAQIFALTGVQPERQKVVCKGVTLRDD 229
V V G E+ DV+V D +P+L + G+ + V GVTL DD
Sbjct: 481 VDVVDGVELLDDVDVVDDGDPLLDNVDVVEDVGLLEDVD--VVDGVTLLDD 529
>SB_20219| Best HMM Match : UCH (HMM E-Value=2.7e-06)
Length = 543
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 379 GLINXGNTCYMNXTVQXL 432
GL N G TCY+N +Q L
Sbjct: 43 GLQNQGGTCYLNSLIQTL 60
>SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06)
Length = 781
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 388 NXGNTCYMNXTVQXL 432
N GNTCYMN +Q L
Sbjct: 608 NLGNTCYMNAILQSL 622
>SB_2637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 379 GLINXGNTCYMNXTVQXL 432
GL N G TCYMN +Q L
Sbjct: 6 GLKNAGATCYMNSVLQQL 23
>SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 379 GLINXGNTCYMNXTVQXL 432
GL N G TCYMN +Q L
Sbjct: 6 GLKNAGATCYMNSVLQQL 23
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,624,530
Number of Sequences: 59808
Number of extensions: 270262
Number of successful extensions: 550
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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