Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060648.seq
(436 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83236-11|CAB05785.1| 489|Caenorhabditis elegans Hypothetical p... 67 6e-12
Z81468-3|CAB03876.1| 489|Caenorhabditis elegans Hypothetical pr... 67 6e-12
U32223-1|AAA74956.1| 489|Caenorhabditis elegans tRNA-guanine tr... 67 6e-12
AC091125-6|AAK27886.3| 474|Caenorhabditis elegans Hypothetical ... 34 0.039
Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical p... 31 0.36
Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical p... 31 0.36
Z29095-11|CAB54286.2| 426|Caenorhabditis elegans Hypothetical p... 31 0.48
AL132902-8|CAC14423.2| 699|Caenorhabditis elegans Hypothetical ... 30 0.63
Z79601-1|CAB01885.2| 716|Caenorhabditis elegans Hypothetical pr... 30 0.83
AL132898-1|CAC14405.1| 357|Caenorhabditis elegans Hypothetical ... 29 1.1
U88180-7|AAB42297.2| 789|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr... 28 2.5
U97012-5|AAK39149.1| 515|Caenorhabditis elegans Hypothetical pr... 27 4.4
AF067616-2|AAC19188.2| 551|Caenorhabditis elegans Deubiquitylat... 27 4.4
Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr... 27 5.9
Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical pr... 27 5.9
Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical pr... 27 5.9
Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical pr... 27 5.9
Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical pr... 27 5.9
U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis def... 27 5.9
U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis def... 27 5.9
AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin c-t... 27 5.9
Z74033-4|CAA98471.2| 822|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical pr... 27 7.8
AL032631-11|CAB63341.1| 975|Caenorhabditis elegans Hypothetical... 27 7.8
AB095019-1|BAC22611.1| 822|Caenorhabditis elegans ubiquitin-spe... 27 7.8
>Z83236-11|CAB05785.1| 489|Caenorhabditis elegans Hypothetical
protein C13B4.2 protein.
Length = 489
Score = 66.9 bits (156), Expect = 6e-12
Identities = 34/53 (64%), Positives = 38/53 (71%)
Frame = +2
Query: 77 VKVKWGKEMYPDVEVNTDDEPVLFKAQIFALTGVQPERQKVVCKGVTLRDDTW 235
V VKW KE Y VEV+T P++FKAQ+FALT V PERQKVV G TL DD W
Sbjct: 4 VNVKWQKEKYV-VEVDTSAPPMVFKAQLFALTQVVPERQKVVIMGRTLGDDDW 55
Score = 40.3 bits (90), Expect = 6e-04
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +1
Query: 247 IDDNALVLVMGSKXXDVPAAP--VEQTRFVEDMNXAELATAMDMPEGLINXGNTCYMNXT 420
I +N +++MGS ++P P +E+ + D E++ P GL N GNTCY N
Sbjct: 60 IKENMTIMMMGS-VGEIPKPPTVLEKKQANRDKQAEEISALY--PCGLANLGNTCYFNSC 116
Query: 421 VQXLK 435
VQ LK
Sbjct: 117 VQMLK 121
>Z81468-3|CAB03876.1| 489|Caenorhabditis elegans Hypothetical
protein C13B4.2 protein.
Length = 489
Score = 66.9 bits (156), Expect = 6e-12
Identities = 34/53 (64%), Positives = 38/53 (71%)
Frame = +2
Query: 77 VKVKWGKEMYPDVEVNTDDEPVLFKAQIFALTGVQPERQKVVCKGVTLRDDTW 235
V VKW KE Y VEV+T P++FKAQ+FALT V PERQKVV G TL DD W
Sbjct: 4 VNVKWQKEKYV-VEVDTSAPPMVFKAQLFALTQVVPERQKVVIMGRTLGDDDW 55
Score = 40.3 bits (90), Expect = 6e-04
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +1
Query: 247 IDDNALVLVMGSKXXDVPAAP--VEQTRFVEDMNXAELATAMDMPEGLINXGNTCYMNXT 420
I +N +++MGS ++P P +E+ + D E++ P GL N GNTCY N
Sbjct: 60 IKENMTIMMMGS-VGEIPKPPTVLEKKQANRDKQAEEISALY--PCGLANLGNTCYFNSC 116
Query: 421 VQXLK 435
VQ LK
Sbjct: 117 VQMLK 121
>U32223-1|AAA74956.1| 489|Caenorhabditis elegans tRNA-guanine
transglycosylase protein.
Length = 489
Score = 66.9 bits (156), Expect = 6e-12
Identities = 34/53 (64%), Positives = 38/53 (71%)
Frame = +2
Query: 77 VKVKWGKEMYPDVEVNTDDEPVLFKAQIFALTGVQPERQKVVCKGVTLRDDTW 235
V VKW KE Y VEV+T P++FKAQ+FALT V PERQKVV G TL DD W
Sbjct: 4 VNVKWQKEKYV-VEVDTSAPPMVFKAQLFALTQVVPERQKVVIMGRTLGDDDW 55
Score = 40.3 bits (90), Expect = 6e-04
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +1
Query: 247 IDDNALVLVMGSKXXDVPAAP--VEQTRFVEDMNXAELATAMDMPEGLINXGNTCYMNXT 420
I +N +++MGS ++P P +E+ + D E++ P GL N GNTCY N
Sbjct: 60 IKENMTIMMMGS-VGEIPKPPTVLEKKQANRDKQAEEISALY--PCGLANLGNTCYFNSC 116
Query: 421 VQXLK 435
VQ LK
Sbjct: 117 VQMLK 121
>AC091125-6|AAK27886.3| 474|Caenorhabditis elegans Hypothetical
protein Y67D2.2 protein.
Length = 474
Score = 34.3 bits (75), Expect = 0.039
Identities = 21/55 (38%), Positives = 29/55 (52%)
Frame = +1
Query: 268 LVMGSKXXDVPAAPVEQTRFVEDMNXAELATAMDMPEGLINXGNTCYMNXTVQXL 432
+V G+ AA V F+ N E +++ +P GL N GNTCYMN +Q L
Sbjct: 11 IVAGTLIGGTLAAAVTYA-FLTSRNGEEASSSRLVP-GLANQGNTCYMNALLQGL 63
>Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical
protein F30A10.10 protein.
Length = 1262
Score = 31.1 bits (67), Expect = 0.36
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 367 DMPEGLINXGNTCYMNXTVQ 426
D P GLIN GN CY+N +Q
Sbjct: 105 DQPAGLINGGNFCYVNSFLQ 124
>Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical
protein F30A10.10 protein.
Length = 1262
Score = 31.1 bits (67), Expect = 0.36
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 367 DMPEGLINXGNTCYMNXTVQ 426
D P GLIN GN CY+N +Q
Sbjct: 105 DQPAGLINGGNFCYVNSFLQ 124
>Z29095-11|CAB54286.2| 426|Caenorhabditis elegans Hypothetical
protein R10E11.3a protein.
Length = 426
Score = 30.7 bits (66), Expect = 0.48
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 379 GLINXGNTCYMNXTVQXL 432
GL+N GNTCY N +Q L
Sbjct: 28 GLVNFGNTCYCNSVIQAL 45
>AL132902-8|CAC14423.2| 699|Caenorhabditis elegans Hypothetical
protein Y71A12B.9 protein.
Length = 699
Score = 30.3 bits (65), Expect = 0.63
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 373 PEGLINXGNTCYMNXTVQXL 432
P G+ N GNTC+MN +Q L
Sbjct: 377 PRGMRNVGNTCFMNAVLQAL 396
>Z79601-1|CAB01885.2| 716|Caenorhabditis elegans Hypothetical
protein K09A9.4 protein.
Length = 716
Score = 29.9 bits (64), Expect = 0.83
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 379 GLINXGNTCYMNXTVQXL 432
G +N GNTCYMN +Q L
Sbjct: 183 GYLNFGNTCYMNAVLQLL 200
>AL132898-1|CAC14405.1| 357|Caenorhabditis elegans Hypothetical
protein Y59A8B.2 protein.
Length = 357
Score = 29.5 bits (63), Expect = 1.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 379 GLINXGNTCYMNXTVQXL 432
GL N GNTC+M+ T+Q L
Sbjct: 25 GLFNMGNTCFMSATLQCL 42
>U88180-7|AAB42297.2| 789|Caenorhabditis elegans Hypothetical
protein T27A3.2 protein.
Length = 789
Score = 28.7 bits (61), Expect = 1.9
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 379 GLINXGNTCYMNXTVQXL 432
GL+N G++CYMN +Q L
Sbjct: 320 GLVNTGSSCYMNSVLQAL 337
>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical
protein F07A11.4 protein.
Length = 1095
Score = 28.3 bits (60), Expect = 2.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 379 GLINXGNTCYMNXTVQXL 432
GL N GNTC+MN +Q L
Sbjct: 424 GLRNIGNTCFMNAVLQML 441
>U97012-5|AAK39149.1| 515|Caenorhabditis elegans Hypothetical
protein C04E6.5 protein.
Length = 515
Score = 27.5 bits (58), Expect = 4.4
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1
Query: 382 LINXGNTCYMNXTVQXL 432
L+N GN+C++N T+Q L
Sbjct: 147 LVNTGNSCFLNSTMQAL 163
>AF067616-2|AAC19188.2| 551|Caenorhabditis elegans Deubiquitylating
with usp/ubp andotu domains protein 2 protein.
Length = 551
Score = 27.5 bits (58), Expect = 4.4
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 367 DMPEGLINXGNTCYMNXTVQXL 432
++ + L+N GN+CY N T+Q +
Sbjct: 31 ELRKRLVNTGNSCYYNSTLQAM 52
>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical
protein F52B5.3 protein.
Length = 1425
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +2
Query: 113 VEVNTDDEPVLFKAQIFALTGVQPERQKVVCKGVTLRDDTW 235
+E D V + QI A+TG QP K ++ W
Sbjct: 359 IESRAFDVKVFYLDQILAMTGYQPPESKAFFSTAEYEEEDW 399
>Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical protein
T24B8.7b protein.
Length = 2923
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 379 GLINXGNTCYMNXTVQXL 432
G+ N G TCYMN +Q L
Sbjct: 1768 GMKNDGGTCYMNAMIQQL 1785
>Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical protein
T24B8.7a protein.
Length = 2920
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 379 GLINXGNTCYMNXTVQXL 432
G+ N G TCYMN +Q L
Sbjct: 1765 GMKNDGGTCYMNAMIQQL 1782
>Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical protein
T24B8.7b protein.
Length = 2923
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 379 GLINXGNTCYMNXTVQXL 432
G+ N G TCYMN +Q L
Sbjct: 1768 GMKNDGGTCYMNAMIQQL 1785
>Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical protein
T24B8.7a protein.
Length = 2920
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 379 GLINXGNTCYMNXTVQXL 432
G+ N G TCYMN +Q L
Sbjct: 1765 GMKNDGGTCYMNAMIQQL 1782
>U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis defect
protein 3, isoforma protein.
Length = 1175
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 379 GLINXGNTCYMNXTVQXL 432
GL+N GN CY N +Q L
Sbjct: 568 GLVNYGNFCYRNAGIQCL 585
>U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis defect
protein 3, isoformb protein.
Length = 1178
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 379 GLINXGNTCYMNXTVQXL 432
GL+N GN CY N +Q L
Sbjct: 571 GLVNYGNFCYRNAGIQCL 588
>AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin
c-terminal hydrolase protein.
Length = 1175
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 379 GLINXGNTCYMNXTVQXL 432
GL+N GN CY N +Q L
Sbjct: 568 GLVNYGNFCYRNAGIQCL 585
>Z74033-4|CAA98471.2| 822|Caenorhabditis elegans Hypothetical
protein F38B7.5 protein.
Length = 822
Score = 26.6 bits (56), Expect = 7.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 382 LINXGNTCYMNXTVQ 426
L+N GN+CY N T+Q
Sbjct: 216 LVNTGNSCYYNSTMQ 230
>Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical
protein K02C4.3 protein.
Length = 1307
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 340 NXAELATAMDMPEGLINXGNTCYMNXTVQXL 432
N ++ + GL N GNTC++N Q L
Sbjct: 187 NLEDMVRNPNFSTGLYNSGNTCWLNCLSQVL 217
>AL032631-11|CAB63341.1| 975|Caenorhabditis elegans Hypothetical
protein Y106G6H.12 protein.
Length = 975
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 382 LINXGNTCYMNXTVQXL 432
L N GN+CY N T+Q L
Sbjct: 284 LYNTGNSCYFNSTMQAL 300
>AB095019-1|BAC22611.1| 822|Caenorhabditis elegans
ubiquitin-specific protease protein.
Length = 822
Score = 26.6 bits (56), Expect = 7.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 382 LINXGNTCYMNXTVQ 426
L+N GN+CY N T+Q
Sbjct: 216 LVNTGNSCYYNSTMQ 230
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,882,655
Number of Sequences: 27780
Number of extensions: 196933
Number of successful extensions: 400
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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