Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060648.seq
         (436 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   1.1  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    23   2.0  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    23   2.0  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    23   2.0  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    23   2.0  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   2.0  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   3.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   3.4  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   7.9  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 173 LSVQISAP*TVPV-HRLYSPPRLGTFPCPILPS 78
           L  Q+S   T P+ +RLY+P  + + P P  PS
Sbjct: 412 LRPQVSPDRTSPMEYRLYNPALIQSQPSPQYPS 444


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 147 SRRRYLH*QGSSQRDKKSFAKESHY 221
           SR+RY     S +R+KKS+  E+ Y
Sbjct: 35  SRKRYSR---SREREKKSYKNENSY 56


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 147 SRRRYLH*QGSSQRDKKSFAKESHY 221
           SR+RY     S +R+KKS+  E+ Y
Sbjct: 35  SRKRYSR---SREREKKSYKNENSY 56


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 147 SRRRYLH*QGSSQRDKKSFAKESHY 221
           SR+RY     S +R+KKS+  E+ Y
Sbjct: 35  SRKRYSR---SREREKKSYKNENSY 56


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 147 SRRRYLH*QGSSQRDKKSFAKESHY 221
           SR+RY     S +R+KKS+  E+ Y
Sbjct: 35  SRKRYSR---SREREKKSYKNENSY 56


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 147 SRRRYLH*QGSSQRDKKSFAKESHY 221
           SR+RY     S +R+KKS+  E+ Y
Sbjct: 268 SRKRYSR---SREREKKSYKNENSY 289


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +1

Query: 325 FVEDMNXAELATAMDMPEGLINXGNTCYMNXTVQXL 432
           F  D+N ++L   +++P  +   G    ++ TVQ +
Sbjct: 160 FAFDLNTSQLLKQVEIPHDVATTGKGELVSLTVQAM 195


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -1

Query: 193 LSLWLDPCQCKYLRLEQYRFIVCIHLHVWVHFLAPF 86
           ++LWL+P   + + +    FI+ +   + V +  PF
Sbjct: 263 MTLWLEPSSTERMIIANLNFILHLFCLLDVQWRIPF 298


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 362 PWICQR 379
           PWICQR
Sbjct: 168 PWICQR 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,188
Number of Sequences: 438
Number of extensions: 2476
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)