Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060647.seq
         (686 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2EX87 Cluster: Putative uncharacterized protein; n=1; ...    35   2.1  
UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    34   3.7  
UniRef50_A5K9Y3 Cluster: Putative uncharacterized protein; n=1; ...    34   3.7  
UniRef50_Q4RWE1 Cluster: Chromosome 2 SCAF14990, whole genome sh...    33   4.9  
UniRef50_Q06AY4 Cluster: Four domain-type voltage-gated ion chan...    33   4.9  
UniRef50_Q6Q762 Cluster: Four domain-type voltage-gated ion chan...    33   8.6  

>UniRef50_A2EX87 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 233

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 12/38 (31%), Positives = 27/38 (71%)
 Frame = -1

Query: 266 IIIILYCSFYLIIAYILGMSCLIIMMLLTFNYYYFYIL 153
           I+++LY +F+ II Y+L +S + I +++T ++ Y  ++
Sbjct: 70  ILVLLYINFWAIIIYLLNLSFINISIIITVSFVYIMMI 107


>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
 Frame = -1

Query: 368 VKTSDQSALGIV*PIRYLTIVIKHL*RCKLKGFPIIIILYCSFYLIIAYILGMSCLII-- 195
           VK   Q+   IV  +R + ++I  L  C+L   PI+     + +  + +I+ ++C++I  
Sbjct: 51  VKAIKQAGKVIVSTLRQIQLIISLL--CRLYCCPIMSQWTANVFTCVNFIIAVNCILISR 108

Query: 194 --MMLLTFNYYYFYILL 150
             ++LL+F +Y+ + L+
Sbjct: 109 IAVVLLSFRFYFLFDLI 125


>UniRef50_A5K9Y3 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 520

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = -1

Query: 278 KGFPIIIILYCSFYLIIAYILGMSCLIIMMLLTFNYYYFYIL 153
           K FP + + +C  Y+++ Y+L    +I+  LL + + YFY++
Sbjct: 147 KAFPNLNVKHC-LYVLVTYLLINVAVIVFSLLVYFFLYFYLI 187


>UniRef50_Q4RWE1 Cluster: Chromosome 2 SCAF14990, whole genome shotgun
            sequence; n=1; Tetraodon nigroviridis|Rep: Chromosome 2
            SCAF14990, whole genome shotgun sequence - Tetraodon
            nigroviridis (Green puffer)
          Length = 1367

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 13/32 (40%), Positives = 25/32 (78%)
 Frame = -1

Query: 260  IILYCSFYLIIAYILGMSCLIIMMLLTFNYYY 165
            +I +CSFY+IIAYI+ ++ L+ +++  F+ +Y
Sbjct: 1070 LIYFCSFYVIIAYIM-LNLLVAIIVENFSLFY 1100


>UniRef50_Q06AY4 Cluster: Four domain-type voltage-gated ion channel
            alpha-1 subunit; n=4; Caenorhabditis|Rep: Four
            domain-type voltage-gated ion channel alpha-1 subunit -
            Caenorhabditis elegans
          Length = 1763

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 13/32 (40%), Positives = 24/32 (75%)
 Frame = -1

Query: 260  IILYCSFYLIIAYILGMSCLIIMMLLTFNYYY 165
            I+ +CSFYLII YI+ ++ L+ +++  F+ +Y
Sbjct: 1462 IVYFCSFYLIITYIV-LNLLVAIIMENFSLFY 1492


>UniRef50_Q6Q762 Cluster: Four domain-type voltage-gated ion channel
            alpha-1 subunit; n=7; Caenorhabditis|Rep: Four
            domain-type voltage-gated ion channel alpha-1 subunit -
            Caenorhabditis elegans
          Length = 1831

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = -1

Query: 260  IILYCSFYLIIAYILGMSCLIIMMLLTFNYYY 165
            II +CSFYLII YI+  + L+ +++  F+ +Y
Sbjct: 1464 IIYFCSFYLIITYIV-RNLLVAVIMENFSLFY 1494


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 546,620,264
Number of Sequences: 1657284
Number of extensions: 9505346
Number of successful extensions: 18698
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18663
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)