Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060647.seq
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    26   5.9  
SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces p...    25   7.8  

>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 574  LQETDPRIIPFLKVDLVVAPDQGIDK 651
            LQ TDP+ I  L  D+V A D+ +++
Sbjct: 1039 LQATDPKRIYSLSADMVKACDEAVER 1064


>SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 315 EISNRLHNTQGRLVRGFHFFTENQK 389
           E S  + NT  +++RG   FTE QK
Sbjct: 198 EFSTEVVNTMVKVLRGTEVFTEQQK 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,511
Number of Sequences: 5004
Number of extensions: 41236
Number of successful extensions: 102
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)