Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060647.seq
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_22396| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  

>SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1576

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = -1

Query: 269 PIIIILYCSFYLIIAYILGMSCLIIMMLLTFNYYY 165
           P+++     +Y ++   + MSCL +++   + YYY
Sbjct: 558 PLLLCRASRYYYVVHLAITMSCLSLLLCRAYRYYY 592



 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = -1

Query: 266 IIIILYCSFYLIIAYILGMSCLIIMMLLTFNYYYFYILLRD*MCFNL 126
           +++   C +Y  +   + MSC+ +++     YYY   L     C +L
Sbjct: 490 LVLCRACRYYYFVHVAITMSCISLLLCRASRYYYVVHLAITMSCISL 536


>SB_22396| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -1

Query: 266 IIIILYCSFYLIIAYILGMSCLIIMMLLTFNYYY 165
           IIII+     +II  I+ +  +II++++  NYYY
Sbjct: 374 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIINYYY 407


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,932,047
Number of Sequences: 59808
Number of extensions: 308493
Number of successful extensions: 563
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)