Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060647.seq
         (686 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY160083-1|AAN77520.1| 1910|Drosophila melanogaster alpha1U prot...    31   1.1  
AE014298-2027|AAN09585.1| 2148|Drosophila melanogaster CG1517-PC...    31   1.1  
AE014298-2026|AAF48365.2| 2196|Drosophila melanogaster CG1517-PB...    31   1.1  
AY047565-1|AAK77297.1|  461|Drosophila melanogaster GH07782p pro...    31   2.0  
AE014297-4559|AAF57020.1|  461|Drosophila melanogaster CG9747-PA...    31   2.0  
X84409-1|CAA59129.1|  133|Drosophila melanogaster sodium channel...    29   7.9  
X14398-1|CAA32571.1|  361|Drosophila melanogaster sodium channel...    29   7.9  
AE013599-3978|AAM70798.1| 1618|Drosophila melanogaster CG9071-PA...    29   7.9  
AE013599-3977|AAF47291.4| 2327|Drosophila melanogaster CG9071-PB...    29   7.9  

>AY160083-1|AAN77520.1| 1910|Drosophila melanogaster alpha1U protein
            protein.
          Length = 1910

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 12/36 (33%), Positives = 25/36 (69%)
 Frame = -1

Query: 272  FPIIIILYCSFYLIIAYILGMSCLIIMMLLTFNYYY 165
            F   +I +C+FY+II YI+ ++ L+ +++  F+ +Y
Sbjct: 1432 FTASLIYFCTFYVIITYIV-LNLLVAIIMENFSLFY 1466


>AE014298-2027|AAN09585.1| 2148|Drosophila melanogaster CG1517-PC,
            isoform C protein.
          Length = 2148

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 12/36 (33%), Positives = 25/36 (69%)
 Frame = -1

Query: 272  FPIIIILYCSFYLIIAYILGMSCLIIMMLLTFNYYY 165
            F   +I +C+FY+II YI+ ++ L+ +++  F+ +Y
Sbjct: 1670 FTASLIYFCTFYVIITYIV-LNLLVAIIMENFSLFY 1704


>AE014298-2026|AAF48365.2| 2196|Drosophila melanogaster CG1517-PB,
            isoform B protein.
          Length = 2196

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 12/36 (33%), Positives = 25/36 (69%)
 Frame = -1

Query: 272  FPIIIILYCSFYLIIAYILGMSCLIIMMLLTFNYYY 165
            F   +I +C+FY+II YI+ ++ L+ +++  F+ +Y
Sbjct: 1718 FTASLIYFCTFYVIITYIV-LNLLVAIIMENFSLFY 1752


>AY047565-1|AAK77297.1|  461|Drosophila melanogaster GH07782p
           protein.
          Length = 461

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +3

Query: 414 YSHSSVSNKVRSWQARPPLSWRPAF-*SSLHI---*CLTSYWPPLNQCQKYTII 563
           Y+ + V ++V  WQ + PL W      S LHI    CL +Y  PL +   YT I
Sbjct: 89  YTRTFVGDRVLGWQFQAPLKWDKVIQISLLHIVAGICLLTY--PLRELNPYTTI 140


>AE014297-4559|AAF57020.1|  461|Drosophila melanogaster CG9747-PA
           protein.
          Length = 461

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +3

Query: 414 YSHSSVSNKVRSWQARPPLSWRPAF-*SSLHI---*CLTSYWPPLNQCQKYTII 563
           Y+ + V ++V  WQ + PL W      S LHI    CL +Y  PL +   YT I
Sbjct: 89  YTRTFVGDRVLGWQFQAPLKWDKVIQISLLHIVAGICLLTY--PLRELNPYTTI 140


>X84409-1|CAA59129.1|  133|Drosophila melanogaster sodium channel
           homologue protein.
          Length = 133

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = -1

Query: 275 GFPIIIILYCSFYLIIAYILGMSCLIIMMLLTFN 174
           G P++ I Y + ++II+Y++ ++  I ++L  FN
Sbjct: 97  GHPLLAITYFTSFIIISYMIVINMYIAIILENFN 130


>X14398-1|CAA32571.1|  361|Drosophila melanogaster sodium channel
           protein protein.
          Length = 361

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = -1

Query: 275 GFPIIIILYCSFYLIIAYILGMSCLIIMMLLTFN 174
           G P++ I Y + ++II+Y++ ++  I ++L  FN
Sbjct: 211 GHPLLAITYFTSFIIISYMIVINMYIAIILENFN 244


>AE013599-3978|AAM70798.1| 1618|Drosophila melanogaster CG9071-PA,
            isoform A protein.
          Length = 1618

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = -1

Query: 275  GFPIIIILYCSFYLIIAYILGMSCLIIMMLLTFN 174
            G P++ I Y + ++II+Y++ ++  I ++L  FN
Sbjct: 1429 GHPLLAITYFTSFIIISYMIVINMYIAIILENFN 1462


>AE013599-3977|AAF47291.4| 2327|Drosophila melanogaster CG9071-PB,
            isoform B protein.
          Length = 2327

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = -1

Query: 275  GFPIIIILYCSFYLIIAYILGMSCLIIMMLLTFN 174
            G P++ I Y + ++II+Y++ ++  I ++L  FN
Sbjct: 2138 GHPLLAITYFTSFIIISYMIVINMYIAIILENFN 2171


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,131,310
Number of Sequences: 53049
Number of extensions: 429924
Number of successful extensions: 781
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)