Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060647.seq
(686 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t... 33 0.14
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t... 33 0.14
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t... 33 0.14
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 33 0.25
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 33 0.25
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 33 0.25
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 33 0.25
Z93383-14|CAB07631.2| 279|Caenorhabditis elegans Hypothetical p... 28 5.4
AL021175-1|CAA15965.1| 307|Caenorhabditis elegans Hypothetical ... 28 5.4
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 28 5.4
>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 2 protein.
Length = 1785
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/32 (40%), Positives = 24/32 (75%)
Frame = -1
Query: 260 IILYCSFYLIIAYILGMSCLIIMMLLTFNYYY 165
I+ +CSFYLII YI+ ++ L+ +++ F+ +Y
Sbjct: 1484 IVYFCSFYLIITYIV-LNLLVAIIMENFSLFY 1514
>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1763
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/32 (40%), Positives = 24/32 (75%)
Frame = -1
Query: 260 IILYCSFYLIIAYILGMSCLIIMMLLTFNYYY 165
I+ +CSFYLII YI+ ++ L+ +++ F+ +Y
Sbjct: 1462 IVYFCSFYLIITYIV-LNLLVAIIMENFSLFY 1492
>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1785
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/32 (40%), Positives = 24/32 (75%)
Frame = -1
Query: 260 IILYCSFYLIIAYILGMSCLIIMMLLTFNYYY 165
I+ +CSFYLII YI+ ++ L+ +++ F+ +Y
Sbjct: 1484 IVYFCSFYLIITYIV-LNLLVAIIMENFSLFY 1514
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = -1
Query: 260 IILYCSFYLIIAYILGMSCLIIMMLLTFNYYY 165
II +CSFYLII YI+ + L+ +++ F+ +Y
Sbjct: 1430 IIYFCSFYLIITYIV-RNLLVAVIMENFSLFY 1460
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = -1
Query: 260 IILYCSFYLIIAYILGMSCLIIMMLLTFNYYY 165
II +CSFYLII YI+ + L+ +++ F+ +Y
Sbjct: 1464 IIYFCSFYLIITYIV-RNLLVAVIMENFSLFY 1494
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = -1
Query: 260 IILYCSFYLIIAYILGMSCLIIMMLLTFNYYY 165
II +CSFYLII YI+ + L+ +++ F+ +Y
Sbjct: 1575 IIYFCSFYLIITYIV-RNLLVAVIMENFSLFY 1605
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = -1
Query: 260 IILYCSFYLIIAYILGMSCLIIMMLLTFNYYY 165
II +CSFYLII YI+ + L+ +++ F+ +Y
Sbjct: 1494 IIYFCSFYLIITYIV-RNLLVAVIMENFSLFY 1524
>Z93383-14|CAB07631.2| 279|Caenorhabditis elegans Hypothetical
protein F54B8.12 protein.
Length = 279
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 239 YLIIAYILGMSCLIIMMLLTFNYYYFYILL 150
++IIA+I+ +S L + FN Y Y +L
Sbjct: 2 FIIIAFIIALSILFSQFVFYFNLYLLYSIL 31
>AL021175-1|CAA15965.1| 307|Caenorhabditis elegans Hypothetical
protein Y6E2A.1 protein.
Length = 307
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -1
Query: 224 YILGMSCL---IIMMLLTFNYYYFYI 156
Y+LGM C +++ LLT N+YY Y+
Sbjct: 48 YVLGMYCSCYGMMLSLLTINFYYRYL 73
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -1
Query: 260 IILYCSFYLIIAYIL 216
II +CSFYLII YI+
Sbjct: 1522 IIYFCSFYLIITYIV 1536
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,585,596
Number of Sequences: 27780
Number of extensions: 227618
Number of successful extensions: 538
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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