Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060647.seq
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   2.7  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   4.8  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   8.3  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 224 YILGMSCLIIMMLLTFNYYYFYILL 150
           Y+LG+ CL ++ L  +++    ILL
Sbjct: 381 YLLGIQCLTVVCLAFWSFIVSTILL 405


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -3

Query: 492 IKTLDAKRAAGELASF*LCY*RYCVSKGTSCKLIAFD 382
           + TL   +  GELA    C     ++  T C+L A D
Sbjct: 156 LSTLAPGKVLGELAILYNCKRTATITAATDCQLWAID 192


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +2

Query: 539 SMPKIYYYNTFTYRRP 586
           ++P +Y+ + F Y RP
Sbjct: 664 TIPNMYFKDVFIYNRP 679


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +2

Query: 539 SMPKIYYYNTFTYRRP 586
           ++P +Y+ + F Y RP
Sbjct: 664 TIPNMYFKDVFIYNRP 679


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,708
Number of Sequences: 438
Number of extensions: 3141
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)