Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060647.seq
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11650.1 68416.m01428 harpin-induced family protein / HIN1 fa...    30   1.7  
At4g27630.2 68417.m03972 expressed protein                             27   8.8  
At1g64990.1 68414.m07366 expressed protein contains similarity t...    27   8.8  

>At3g11650.1 68416.m01428 harpin-induced family protein / HIN1
           family protein / harpin-responsive family protein /
           NDR1/HIN1-like protein 2 identical to NDR1/HIN1-Like
           protein 2 (GP:9502174) [Arabidopsis thaliana]; similar
           to hin1 GB:CAA68848 [Nicotiana tabacum]
          Length = 240

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 263 IIILYCSFYLIIAYILGMSCLIIMMLLTFNYYYFYI 156
           I+ L C+  + +A ILG++ LI+ ++   N   FY+
Sbjct: 51  ILSLICNILIAVAVILGVAALILWLIFRPNAVKFYV 86


>At4g27630.2 68417.m03972 expressed protein
          Length = 467

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 8/30 (26%), Positives = 21/30 (70%)
 Frame = -1

Query: 233 IIAYILGMSCLIIMMLLTFNYYYFYILLRD 144
           ++ + + + CLI++++    YY+ Y++LR+
Sbjct: 75  MVNWKVDLFCLIVLLVFMLPYYHCYLMLRN 104


>At1g64990.1 68414.m07366 expressed protein contains similarity to
           putative G-protein coupled receptor GI:6649579 from
           [Homo sapiens]
          Length = 468

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/30 (30%), Positives = 21/30 (70%)
 Frame = -1

Query: 233 IIAYILGMSCLIIMMLLTFNYYYFYILLRD 144
           +I + + + CLI++++    YY+ Y++LR+
Sbjct: 75  MINWKVDLFCLILLLVFMLPYYHCYLMLRN 104


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,715,313
Number of Sequences: 28952
Number of extensions: 205545
Number of successful extensions: 388
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)