Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060646.seq
         (686 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    27   0.11 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   1.8  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   5.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   5.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   5.4  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    21   7.2  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    21   7.2  

>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 16/77 (20%), Positives = 43/77 (55%)
 Frame = -2

Query: 487 MTSKTFNKLQLRH*FRHLVHDNV*HLTIFYQFSRKKNLMFLLSLVEHNENLKNKIYTRFL 308
           +T+ T+N    ++ + ++   N+  +TIF+ F+ KK   F++  ++++     K++++  
Sbjct: 43  LTNLTYNNTNRKYYWLNVCCLNLSIVTIFFNFATKKLEQFIVRFMKYHFFGTLKLWSQLF 102

Query: 307 TTKHGSLTTSTVLDRCH 257
           +T  G +    V+ +C+
Sbjct: 103 STFAG-IEVLHVVKQCY 118


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
          protein protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 1  RHEVRLPDHQQRDEGQEAGSVEGDRQPGQED 93
          R +   P   + + G+E    EGD+  G ED
Sbjct: 3  RRKQDCPKRMKWEGGEEGSPEEGDKLEGDED 33


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +2

Query: 14  DYQTTSNVTKVKKPDLSKEIDSLDKRISKQTITSETIERKSVMTSSHKSETSSTVT-KKF 190
           DY    N+  +K+  + +E  S+   + + T+T   +     +    KSE+S   + KK 
Sbjct: 189 DYSCEYNLVWIKEESIYEERISVVSGLHEATLTDLALGENYTVQIMAKSESSPFESLKKS 248

Query: 191 GNF 199
            NF
Sbjct: 249 LNF 251


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 94  LKANDHLGDYRKEVRND 144
           L+AND L  + KE+R +
Sbjct: 684 LQANDELSAHSKEIRGE 700


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 94  LKANDHLGDYRKEVRND 144
           L+AND L  + KE+R +
Sbjct: 684 LQANDELSAHSKEIRGE 700


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -3

Query: 147 LVITDFLSIVSEVIVCFEILLSRLSISFDRSGF 49
           L++T F  +    ++    +LS + +SF ++GF
Sbjct: 103 LIVTLFTFLARGTLIKSFDMLSHVDVSFIKAGF 135



 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 609 SCIKVSFLKSGFKAE 653
           S + VSF+K+GF+ E
Sbjct: 124 SHVDVSFIKAGFRLE 138


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -3

Query: 147 LVITDFLSIVSEVIVCFEILLSRLSISFDRSGF 49
           L++T F  +    ++    +LS + +SF ++GF
Sbjct: 103 LIVTLFTFLARGTLIKSFDMLSHVDVSFIKAGF 135



 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 609 SCIKVSFLKSGFKAE 653
           S + VSF+K+GF+ E
Sbjct: 124 SHVDVSFIKAGFRLE 138


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,625
Number of Sequences: 336
Number of extensions: 2276
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)