Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060646.seq
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomy...    30   0.36 
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    29   0.48 
SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual           29   0.83 
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    27   1.9  
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    26   5.9  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   7.8  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   7.8  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    25   7.8  

>SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +1

Query: 82  GQEDLKANDHLGDYRKEVRNDQLSQIGDQLHRHQEIRQLLEGK*RKLSWRASCVDSCHRD 261
           G   L   +H    +  + +D + Q+ D +H   E +++ E   R + W   C+ +  R 
Sbjct: 126 GTPMLLTPEHSISLQNSIGSDIMMQLDDVVHTLTESKRMEEAMYRSIRWLDRCIQAHKRP 185

Query: 262 TCQGL-CLL 285
             Q L C++
Sbjct: 186 ETQNLFCII 194


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +2

Query: 26  TSNVTKVKKPDLSKEIDSLDKRISKQTITSETIERKSVMTSSHKSETSSTVTK 184
           +SN   +K  D      S+D+ +++Q    +  +RKS  +S HK  T +TVTK
Sbjct: 395 SSNGVWLKFDDDFVSNSSIDRVLNQQAYILQ-YKRKSTSSSKHKLNTENTVTK 446


>SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 312

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 22/110 (20%), Positives = 43/110 (39%)
 Frame = -2

Query: 445 FRHLVHDNV*HLTIFYQFSRKKNLMFLLSLVEHNENLKNKIYTRFLTTKHGSLTTSTVLD 266
           FR + H+ + H   F     +   + +  ++   +N++N      L T +   T++  + 
Sbjct: 26  FRGIYHEKLKHPDDFDSIISRAKAVGVEKMMITGDNVENSEEALNLATNYECFTSTVGVH 85

Query: 265 RCHGDSCQRTKHATTICVIYLLEVAEFLGDGGAGLRFVRAGHYGLPFDSL 116
            C      R          YL+++      G A  + V  G +GL +D L
Sbjct: 86  PCQAQCFLRHSEGPED---YLVKLEALANKGKASGKVVAFGEFGLDYDRL 132


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +2

Query: 50  KPDLSKEIDSLDKRISKQTITSETIERKSVMTSSHKSETSSTVTKKF 190
           +P+LSK ++ +DK + +  I S   E    +T     +   T+ +K+
Sbjct: 7   RPELSKTVEQIDKSLWRLNIDSAGGETWEYVTKEEAEKRPLTIAEKY 53


>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 388 RKKNLMFLLSLVEHNENLKNKIY-TRFLTTKHGSLTTSTVL 269
           +K NL FL+       +    IY T   TT HG LTT  ++
Sbjct: 156 KKPNLEFLMPCTITKLSKGENIYRTHIHTTTHGELTTKLLI 196


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
 Frame = +2

Query: 11  SDYQTTSNVTKVKKPDLSKE---IDSLDKRISKQTITSETIERKSVMTSSHKSETSSTVT 181
           S+  ++S V  + K +  K+   I S  + I +++++SET   K   TSS+  +T++ V 
Sbjct: 514 SEVYSSSTVDTISKLNTDKDNYLIKSKKEPIQQKSVSSETTLVKPSSTSSY-IDTTNNVL 572

Query: 182 KKFGNF 199
           K   +F
Sbjct: 573 KTNSSF 578


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = +2

Query: 14  DYQTTSNVTKVKKPDLSKEIDSLDKRISKQTITSETIERKSVMTSSHKSETSSTVTKKF 190
           DY +T   T V   +  ++IDSL +R+    I + + +  S+   +  +    ++ KKF
Sbjct: 630 DYISTLIDTLVSLENPMRDIDSLIQRLRSFDIYNHSAQSPSLFLCASVARVLDSILKKF 688


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = -2

Query: 412 LTIFYQFSRKKNLMFLLSLVEHNENLK--NKI--YTRFLTTKHGSLTTSTVLDRCHG 254
           + +FY F    NL F+LSL  + E L   NK+  +       + +L   ++ D  HG
Sbjct: 161 IKLFYTFQDAHNLYFVLSLARNGELLDYINKLGRFNEICAQYYAALIVDSI-DYMHG 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,192,467
Number of Sequences: 5004
Number of extensions: 37852
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)