Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060646.seq
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0078 + 17725931-17726057,17726128-17726305,17726942-177270...    33   0.28 
01_01_1151 + 9165454-9165580,9165658-9165835,9167256-9167337,916...    32   0.49 
11_04_0331 + 16456577-16456579,16456664-16456911,16457625-164578...    28   6.0  
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921...    28   8.0  

>05_04_0078 +
           17725931-17726057,17726128-17726305,17726942-17727023,
           17728500-17728676,17728763-17728930,17729028-17729219
          Length = 307

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = +2

Query: 20  QTTSNVTKVKKPDLSKEIDSLDKRISKQTIT--SETIERKSVMTSSHKSETSSTVTKKFG 193
           QTTSNV  + KP +   I  L++      I      +E K ++    K  T   + K+F 
Sbjct: 174 QTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLILKRFD 233

Query: 194 NF*KVNDANCRGVL 235
              K N+   + +L
Sbjct: 234 THSKTNEQTVQEML 247


>01_01_1151 +
           9165454-9165580,9165658-9165835,9167256-9167337,
           9167907-9168083,9168174-9168341,9168466-9168657
          Length = 307

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = +2

Query: 20  QTTSNVTKVKKPDLSKEIDSLDKRISKQTIT--SETIERKSVMTSSHKSETSSTVTKKFG 193
           QTTSNV  + KP +   I  L++      I      +E K ++    K  T   + K F 
Sbjct: 174 QTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLILKSFD 233

Query: 194 NF*KVNDANCRGVL 235
              K N+   + +L
Sbjct: 234 THSKTNEQTVQEML 247


>11_04_0331 +
           16456577-16456579,16456664-16456911,16457625-16457812,
           16458293-16458489,16458579-16458768,16458865-16459084,
           16459169-16459376,16459508-16459642,16459725-16459916,
           16459999-16460171,16460266-16460454,16460539-16460655,
           16460734-16460818,16460900-16461052,16461135-16461260,
           16461391-16461573,16461823-16461984,16462098-16462214
          Length = 961

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 46  QEAGSVEGDRQPGQEDLKANDHLGDYRKEVRNDQLSQIG 162
           ++ G V  + +   EDL  +++L DYR+    DQ   +G
Sbjct: 61  EDDGVVAAEEEEDGEDLFNDNYLDDYRRMDEQDQYESVG 99


>02_02_0346 -
           9214365-9214583,9214830-9214919,9215012-9215177,
           9215601-9215911,9215944-9216566,9216779-9216968,
           9217096-9217197,9217285-9217425,9217815-9218411,
           9219126-9219286,9220709-9220824,9221538-9221654,
           9221746-9221808,9221879-9221949
          Length = 988

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +1

Query: 7   EVRLPDHQQRDEGQEAGSVEGDRQPGQEDLKANDHLGDYRKEVRNDQLSQIG 162
           E R+P      EG E    +G+ + G+ED    D  G  R+  +   + Q G
Sbjct: 83  ESRVPQPDGESEGGEEDEHDGESEGGEEDKNDGDGGGQTRRMGKRKTIVQKG 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,343,679
Number of Sequences: 37544
Number of extensions: 224846
Number of successful extensions: 595
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)