Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060646.seq
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22168| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.66
SB_27611| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 30 1.5
SB_43850| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_22570| Best HMM Match : Filament (HMM E-Value=0.1) 29 2.7
SB_34460| Best HMM Match : Borrelia_orfA (HMM E-Value=0.3) 29 4.7
SB_31702| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-05) 28 6.2
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_2557| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_28005| Best HMM Match : PGAMP (HMM E-Value=6.9) 28 8.1
SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6) 28 8.1
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45) 28 8.1
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0) 28 8.1
>SB_22168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 31.5 bits (68), Expect = 0.66
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +1
Query: 28 QQRDEGQEAGSVEGDRQPGQEDLKANDHLGDYRKEVRNDQLSQIGDQLHRHQEIRQLLEG 207
+Q +EAG ++ ++PGQ + D +K +R + Q+H +E RQ+ E
Sbjct: 17 RQMSRQKEAGQIDEQKEPGQIVEQKEDGQITQQKIIRQIDEQKRTKQMHEQKEARQMNEQ 76
Query: 208 K 210
K
Sbjct: 77 K 77
>SB_27611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 437
Score = 31.1 bits (67), Expect = 0.87
Identities = 23/108 (21%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Frame = +1
Query: 13 RLPDHQQRDEGQEAGSVEGDRQPGQEDLKANDHLGDYRKEVRNDQLSQIGDQLHRHQEIR 192
R+ + ++R E + + VE + + + + G+ RKEV + + G++ +
Sbjct: 313 RVEEGEKRKEVESSSRVEEGEKRKEVESSSRVEEGEKRKEVESSSRVEEGEKRKEVESSS 372
Query: 193 QLLEGK*RKLSWRASCVDSCHRDTCQGLCLLSMIRA*SL-RIECRSYF 333
++ EG+ RK +S V LC+LS + ++ + C ++F
Sbjct: 373 RVEEGEKRKEVESSSRVGMAPSPDVGSLCMLSAVYYFNMPKFYCSNWF 420
>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
Length = 1463
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 67 GDRQPGQEDLKANDHLGDYRKEVRNDQLSQIGDQ-LHRHQEIRQL 198
G PGQED+ D L D+ D ++I +Q H +E R+L
Sbjct: 367 GQPHPGQEDMAKKDPLDDFDYGDEQDDATRIAEQRRHLREEERRL 411
>SB_43850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 56 DLSKEIDSLDKRISKQTITSETIERKSVMTSSHKSET 166
+L E D D+ K+T+TS +R+ MTS+H+ T
Sbjct: 421 ELDYEKDDSDRAKEKETLTSPKQKRRRRMTSAHQHST 457
>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1906
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = +2
Query: 14 DYQTTSNVTKVKKPDLSKEIDSLDKRISKQTITSETIERKSVMTSSHKSETSSTVTK 184
DY+ + ++++KP L LDK + T+E+ S ++ T +T +K
Sbjct: 233 DYEDSDLESELEKPPLPSSPPPLDKELEINVKNRTTLEKSSEKSTKQHDSTQTTSSK 289
>SB_22570| Best HMM Match : Filament (HMM E-Value=0.1)
Length = 601
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Frame = +2
Query: 14 DYQTTSNVTKVKKPDLSKEIDSLDKRISKQT-ITSETIERKSVMTSSHKS-ET-SSTVTK 184
+YQT S + + SKE++ LDK +KQ + E ER + +T ++ ET T+
Sbjct: 60 EYQTDSTRKATEILEKSKELEYLDKEYTKQKYVLDELQERLNDLTQERENYETREKTLQS 119
Query: 185 KFGNF*KVNDA 217
K + K N++
Sbjct: 120 KITSIEKENNS 130
>SB_34460| Best HMM Match : Borrelia_orfA (HMM E-Value=0.3)
Length = 1102
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +2
Query: 41 KVKKPDLSKEIDSLDKRISKQTITSETIERKSVMTSSHKSETSSTVTKKFGNF*KVNDAN 220
K K+ DL KE L KRI T SE +E+K +S + +T + +ND N
Sbjct: 778 KPKEEDLKKENMDLAKRIDHMTWKSEMMEKKMQDMASSSLMMNKVITTTTDS---INDLN 834
>SB_31702| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-05)
Length = 364
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 238 TKHATTICVIYLLEVAEFLGDGGAGLRFVRAGHYGLPFDSLR 113
TKHAT IC++ L ++ A L F+ +G G P LR
Sbjct: 284 TKHATVICLVTLFHFTVYIVI--AVLFFLNSGKIGSPSPELR 323
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 59 LSKEIDSLDKRISKQTITSETIERKSVMTSSHKSETSSTVTKK 187
L KEI DK I + T ET+E+ + S ET + K+
Sbjct: 2375 LKKEIRDRDKSIGELTEKIETLEKDNSSVQSEYKETKEKLKKR 2417
>SB_2557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 627
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 82 GQEDLKANDHLGDYRKEVRNDQLSQIGDQLHRHQEIRQLLEG 207
G E +L EV ND +++ DQL+R +RQ L G
Sbjct: 463 GDELTTVRKNLETVNIEVDNDLINETWDQLYREHFLRQALAG 504
>SB_28005| Best HMM Match : PGAMP (HMM E-Value=6.9)
Length = 196
Score = 27.9 bits (59), Expect = 8.1
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +1
Query: 4 HEV-RLPDHQQRDEGQEA---GSVEGDRQPGQEDLKANDHLGDYRKEVRNDQLSQIG-DQ 168
H+V RLP Q + A S Q+D +D LGD +EVR+ ++ G DQ
Sbjct: 87 HQVWRLPRRQDTRKAATAPDPNSARNKSDDEQDDGDHSDELGDLEREVRDAAEAENGCDQ 146
Query: 169 LHRHQE 186
H ++
Sbjct: 147 GHNQED 152
>SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6)
Length = 722
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 2 GTRSDYQTTSNVTKVKKPDLSKEIDSLDKRISKQTITSETIERKSVMTSSHKSETSSTV 178
G RSD + S KP++SK D + + +S S T + K++ S S V
Sbjct: 607 GQRSDGEIKSQSCSNIKPEISKPRDGIKRPVSGDPRRSNTEKTKAIPILSENKPCSDDV 665
>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
Length = 4160
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +2
Query: 11 SDYQTTSNVTKVKKPDLSKEIDSLDKRISKQTITSETIERKSVMTS--SHKSETSSTVTK 184
S+YQ V + + DL KE+ +L+K+ QT+ +E + S + S SE+ S T+
Sbjct: 2311 SEYQLRFEVAQQENDDLQKELCNLEKK--TQTLETEIKKNGSELASLRIENSESKSRFTQ 2368
>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 1024
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = -2
Query: 514 NKISFFLIKMTSKTFNKLQLRH*FRHLVHDNV*HLTIFYQFSRKKN 377
++I +FLI T+K ++++ FR+ + L I Y+ +K+N
Sbjct: 79 DEIQYFLIPKTAKAAQNIKVKSYFRYYESNYFMFLLIVYRTEKKQN 124
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,027,116
Number of Sequences: 59808
Number of extensions: 280592
Number of successful extensions: 788
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -