Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060646.seq
         (686 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    27   0.42 
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    24   5.2  
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    23   9.0  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 27.5 bits (58), Expect = 0.42
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +2

Query: 35   VTKVKKPDLSKEIDSLDKRISKQTITSETIERKSVMTSSHK 157
            V + K   L K+ID L   ISK T+  +T ER +V  S  K
Sbjct: 897  VLQTKINGLGKQIDKLSANISKLTVEIKTSER-NVQKSKDK 936


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 594 FKFQSSCIKVSFLKSGFKAEGLNT 665
           F  + SCI  SFL  G K + +NT
Sbjct: 807 FLHRVSCILKSFLSVGNKVKAINT 830


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 280 STVLDRCHGDSCQRTKHATTICVIYLL 200
           S V   C GD  Q  +H   IC +YLL
Sbjct: 916 SPVCPAC-GDENQTAEHTIFICGMYLL 941


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 539,683
Number of Sequences: 2352
Number of extensions: 10248
Number of successful extensions: 237
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69413730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)