Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060646.seq
(686 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC096830-1|AAH96830.1| 411|Homo sapiens corticotropin releasing... 31 3.8
AY449734-1|AAR18078.1| 411|Homo sapiens corticotropin-releasing... 31 3.8
AF019381-1|AAB94562.1| 397|Homo sapiens corticotropin releasing... 31 3.8
AF011406-1|AAB94503.1| 438|Homo sapiens corticotropin releasing... 31 3.8
AC004976-3|AAC71653.1| 411|Homo sapiens corticotropin-releasing... 31 3.8
AC004976-2|AAC71654.1| 397|Homo sapiens WUGSC:H_DJ1143H19.2a pr... 31 3.8
AB065699-1|BAC05922.1| 411|Homo sapiens seven transmembrane hel... 31 3.8
L41840-1|AAC41758.1| 3224|Homo sapiens nucleoporin protein. 30 6.7
D42063-1|BAA07662.1| 3224|Homo sapiens RanBP2 (Ran-binding prote... 30 6.7
AC010095-2|AAY14984.1| 3224|Homo sapiens unknown protein. 30 6.7
AB209483-1|BAD92720.1| 3138|Homo sapiens RAN binding protein 2 v... 30 6.7
>BC096830-1|AAH96830.1| 411|Homo sapiens corticotropin releasing
hormone receptor 2 protein.
Length = 411
Score = 31.1 bits (67), Expect = 3.8
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 424 NV*HLTIFYQFSRKKNLMFLLSLVEHNENLKNKIYTRFLTT 302
NV H + F + + FLL LV+H + N+++ R +TT
Sbjct: 149 NVIHWNLITTFILRNVMWFLLQLVDHEVHESNEVWCRCITT 189
>AY449734-1|AAR18078.1| 411|Homo sapiens corticotropin-releasing
hormone receptor 2 protein.
Length = 411
Score = 31.1 bits (67), Expect = 3.8
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 424 NV*HLTIFYQFSRKKNLMFLLSLVEHNENLKNKIYTRFLTT 302
NV H + F + + FLL LV+H + N+++ R +TT
Sbjct: 149 NVIHWNLITTFILRNVMWFLLQLVDHEVHESNEVWCRCITT 189
>AF019381-1|AAB94562.1| 397|Homo sapiens corticotropin releasing
hormone receptor type 2 gamma isoform protein.
Length = 397
Score = 31.1 bits (67), Expect = 3.8
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 424 NV*HLTIFYQFSRKKNLMFLLSLVEHNENLKNKIYTRFLTT 302
NV H + F + + FLL LV+H + N+++ R +TT
Sbjct: 135 NVIHWNLITTFILRNVMWFLLQLVDHEVHESNEVWCRCITT 175
>AF011406-1|AAB94503.1| 438|Homo sapiens corticotropin releasing
hormone receptor type 2 beta isoform protein.
Length = 438
Score = 31.1 bits (67), Expect = 3.8
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 424 NV*HLTIFYQFSRKKNLMFLLSLVEHNENLKNKIYTRFLTT 302
NV H + F + + FLL LV+H + N+++ R +TT
Sbjct: 176 NVIHWNLITTFILRNVMWFLLQLVDHEVHESNEVWCRCITT 216
>AC004976-3|AAC71653.1| 411|Homo sapiens corticotropin-releasing
factor receptor protein.
Length = 411
Score = 31.1 bits (67), Expect = 3.8
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 424 NV*HLTIFYQFSRKKNLMFLLSLVEHNENLKNKIYTRFLTT 302
NV H + F + + FLL LV+H + N+++ R +TT
Sbjct: 149 NVIHWNLITTFILRNVMWFLLQLVDHEVHESNEVWCRCITT 189
>AC004976-2|AAC71654.1| 397|Homo sapiens WUGSC:H_DJ1143H19.2a
protein.
Length = 397
Score = 31.1 bits (67), Expect = 3.8
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 424 NV*HLTIFYQFSRKKNLMFLLSLVEHNENLKNKIYTRFLTT 302
NV H + F + + FLL LV+H + N+++ R +TT
Sbjct: 135 NVIHWNLITTFILRNVMWFLLQLVDHEVHESNEVWCRCITT 175
>AB065699-1|BAC05922.1| 411|Homo sapiens seven transmembrane helix
receptor protein.
Length = 411
Score = 31.1 bits (67), Expect = 3.8
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 424 NV*HLTIFYQFSRKKNLMFLLSLVEHNENLKNKIYTRFLTT 302
NV H + F + + FLL LV+H + N+++ R +TT
Sbjct: 149 NVIHWNLITTFILRNVMWFLLQLVDHEVHESNEVWCRCITT 189
>L41840-1|AAC41758.1| 3224|Homo sapiens nucleoporin protein.
Length = 3224
Score = 30.3 bits (65), Expect = 6.7
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +2
Query: 38 TKVKKPDL--SKEIDSLDKRISKQTITSETIERKSVMTSSHKSETSST 175
T+V P S+E DS+ K IS +++SET+++ +++ + +T ST
Sbjct: 2783 TEVMVPSFCKSEEPDSITKSISSPSVSSETMDKPVDLSTRKEIDTDST 2830
>D42063-1|BAA07662.1| 3224|Homo sapiens RanBP2 (Ran-binding protein 2)
protein.
Length = 3224
Score = 30.3 bits (65), Expect = 6.7
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +2
Query: 38 TKVKKPDL--SKEIDSLDKRISKQTITSETIERKSVMTSSHKSETSST 175
T+V P S+E DS+ K IS +++SET+++ +++ + +T ST
Sbjct: 2783 TEVMVPSFCKSEEPDSITKSISSPSVSSETMDKPVDLSTRKEIDTDST 2830
>AC010095-2|AAY14984.1| 3224|Homo sapiens unknown protein.
Length = 3224
Score = 30.3 bits (65), Expect = 6.7
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +2
Query: 38 TKVKKPDL--SKEIDSLDKRISKQTITSETIERKSVMTSSHKSETSST 175
T+V P S+E DS+ K IS +++SET+++ +++ + +T ST
Sbjct: 2783 TEVMVPSFCKSEEPDSITKSISSPSVSSETMDKPVDLSTRKEIDTDST 2830
>AB209483-1|BAD92720.1| 3138|Homo sapiens RAN binding protein 2
variant protein.
Length = 3138
Score = 30.3 bits (65), Expect = 6.7
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +2
Query: 38 TKVKKPDL--SKEIDSLDKRISKQTITSETIERKSVMTSSHKSETSST 175
T+V P S+E DS+ K IS +++SET+++ +++ + +T ST
Sbjct: 2697 TEVMVPSFCKSEEPDSITKSISSPSVSSETMDKPVDLSTRKEIDTDST 2744
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,761,297
Number of Sequences: 237096
Number of extensions: 1221932
Number of successful extensions: 2973
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2972
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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