Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060646.seq
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41272-3|ABM01866.1|  186|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z82095-1|CAB05025.1|  331|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z66513-12|CAI46602.1|  492|Caenorhabditis elegans Hypothetical p...    28   5.4  
Z66513-11|CAA91332.3|  427|Caenorhabditis elegans Hypothetical p...    28   5.4  
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter...    28   5.4  
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a...    28   5.4  
Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical p...    28   7.2  
D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein.        28   7.2  
AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical ...    28   7.2  
Z81106-2|CAB03220.2|  468|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidan...    27   9.5  

>U41272-3|ABM01866.1|  186|Caenorhabditis elegans Hypothetical
           protein T03G11.10 protein.
          Length = 186

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +1

Query: 163 DQLHRHQEIRQLLEGK*RKLSWRASCVDSCHRDTCQGLCLLSM 291
           D    H++IR L     R  SW  +CV SC RD  + + L SM
Sbjct: 40  DNRSAHKQIRSLCT---RVKSWE-TCVRSCSRDNARAILLSSM 78


>Z82095-1|CAB05025.1|  331|Caenorhabditis elegans Hypothetical
           protein ZK849.1 protein.
          Length = 331

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 94  LKANDHLGDYR-KEVRNDQLSQIGDQLHRHQEIRQLLEGK 210
           L A +H GD   +++ ND   ++GD + R QE R L+E K
Sbjct: 72  LLAANHQGDATSRQIFNDMKQEVGDNMERIQEHR-LVEAK 110


>Z66513-12|CAI46602.1|  492|Caenorhabditis elegans Hypothetical
           protein F54D5.5b protein.
          Length = 492

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +1

Query: 1   RHEVRLPDHQQRDEGQEAGSVEGDRQPGQEDLKANDHLGDYRKEVRNDQLSQ 156
           RH     D ++R E  E GS  GD  P  +    + H  D  +E  ND  S+
Sbjct: 195 RHHSSKSDFRRRGESSEYGS--GDPSPVGQYSSRHSHYEDRIEESENDDFSE 244


>Z66513-11|CAA91332.3|  427|Caenorhabditis elegans Hypothetical
           protein F54D5.5a protein.
          Length = 427

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +1

Query: 1   RHEVRLPDHQQRDEGQEAGSVEGDRQPGQEDLKANDHLGDYRKEVRNDQLSQ 156
           RH     D ++R E  E GS  GD  P  +    + H  D  +E  ND  S+
Sbjct: 130 RHHSSKSDFRRRGESSEYGS--GDPSPVGQYSSRHSHYEDRIEESENDDFSE 179


>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter than
            wild-typeprotein 6 protein.
          Length = 1254

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +2

Query: 5    TRSDYQTTSNVTKVKKPDLSKEIDSLDKRISKQTITSE--TIERKSVMTSSHKSETSSTV 178
            T+ +  TT+  T+      + E  +  +  + +T TSE  T E  +V TSS  +E SST 
Sbjct: 819  TQEETTTTTTTTEKTTSKTTTEKPTTSESATTETTTSEPSTTESTTVDTSSATTEESSTA 878

Query: 179  TK 184
             +
Sbjct: 879  AE 880


>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 192 protein.
          Length = 2957

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = +1

Query: 28   QQRDEGQEAGSVE-GDRQPGQEDLK----ANDHLGDYRKEVRNDQLS 153
            + +DEG   GS E G+R+ G  + +     ND  GDY    R D+L+
Sbjct: 1787 ENKDEGDSDGSEESGNRKRGAAEKRKRRRGNDEDGDYSGSYRPDELA 1833


>Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical protein
            T28F3.5 protein.
          Length = 1679

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 65   KEIDSLDKRISKQTITSETIERKSVMTSSHKSETSSTV-TKKFGNF*KVNDANC 223
            KE++ L  RI  ++I  +    KS    +HKS  S  V + KF N   V+ +NC
Sbjct: 878  KEVNILTARILYRSIEHQDFTVKSCKIVTHKSGFSDCVASMKFENDTDVSISNC 931


>Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical
           protein T04A8.14 protein.
          Length = 1521

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +1

Query: 10  VRLPDHQQRDEGQEAGSVEGDRQPGQEDLKANDH--LGDYRKEVRNDQLSQIGDQLHRHQ 183
           +R P+H+  D   E GS +GDR   ++D    D    G   +   +D +   GD   RH+
Sbjct: 127 IRRPNHEDDDLLSERGSDDGDR---RKDRGRGDRGGYGSESERSEDDFIEDDGDAPRRHR 183

Query: 184 E 186
           +
Sbjct: 184 K 184


>Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical
           protein T04A8.14 protein.
          Length = 1521

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +1

Query: 10  VRLPDHQQRDEGQEAGSVEGDRQPGQEDLKANDH--LGDYRKEVRNDQLSQIGDQLHRHQ 183
           +R P+H+  D   E GS +GDR   ++D    D    G   +   +D +   GD   RH+
Sbjct: 127 IRRPNHEDDDLLSERGSDDGDR---RKDRGRGDRGGYGSESERSEDDFIEDDGDAPRRHR 183

Query: 184 E 186
           +
Sbjct: 184 K 184


>D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein.
          Length = 1521

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +1

Query: 10  VRLPDHQQRDEGQEAGSVEGDRQPGQEDLKANDH--LGDYRKEVRNDQLSQIGDQLHRHQ 183
           +R P+H+  D   E GS +GDR   ++D    D    G   +   +D +   GD   RH+
Sbjct: 127 IRRPNHEDDDLLSERGSDDGDR---RKDRGRGDRGGYGSESERSEDDFIEDDGDAPRRHR 183

Query: 184 E 186
           +
Sbjct: 184 K 184


>AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical
           protein Y106G6D.3 protein.
          Length = 555

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = +2

Query: 8   RSDYQTTSNVTKVKKPDLSKEIDSLDKRISKQTITSETIERKSVMTSSHK 157
           + D +  S+ +++KK    + ++  ++  SK+ I+ +   R+S    SHK
Sbjct: 113 KRDRERDSDSSRIKKSGSKRNLEKSNRDDSKRKISKDKNSRRSSQEKSHK 162


>Z81106-2|CAB03220.2|  468|Caenorhabditis elegans Hypothetical
           protein R06C1.3 protein.
          Length = 468

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 367 LLSLVEHNENLKNKIYTRFLTTKHGSLTTSTVLDRCH 257
           L SL +H EN+  +IY   +   H S T    +DR H
Sbjct: 42  LSSLSKHAENIFGEIYHDAMIINHKSNTLQQRIDRLH 78


>U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidance
           abnormal protein1 protein.
          Length = 1732

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -2

Query: 532 YS*FLINKIS--FFLIKMTSKTFNKLQLRH 449
           +S FL  + S  FF+IK  +K FN LQL H
Sbjct: 426 FSDFLQRRTSSVFFIIKAKAKIFNDLQLPH 455


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,026,704
Number of Sequences: 27780
Number of extensions: 213001
Number of successful extensions: 774
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)