Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060646.seq
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   6.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.3  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +2

Query: 29  SNVTKVKKPDLSKEIDSLDKRISKQTITSETIERKSVMTSSHKSETSSTVTKKFGN 196
           S +T + + ++ KE   + + I  +T+  E+I+RKS +T    S+    +    GN
Sbjct: 430 SQLTNISE-EVLKEAKIIQEEI--RTLLDESIQRKSDITELDVSKRCKDLASFMGN 482


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 183 LVTVELVSDL*ELVITDFLSIVSEVIVCFEILLSR 79
           L++V LV  L   +I  FLS+   ++VC  I   R
Sbjct: 22  LLSVLLVGFL--FLILIFLSVAGNILVCVAIYTDR 54


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -2

Query: 307 TTKHGSLTTSTVLDRCHGDSCQRTK-HATTICVIYLLEVAEFLGDGGAGLRFVRAGHYGL 131
           +T+ G + T T+  RC  +  + ++ + T      + E  E +  G   +    A HY L
Sbjct: 543 STEFG-IPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQA-AIHYNL 600

Query: 130 PFDSLRG 110
           P+ SL G
Sbjct: 601 PYSSLYG 607


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,790
Number of Sequences: 438
Number of extensions: 2315
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)