Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060646.seq
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55030.1 68414.m06285 F-box family protein contains F-box dom...    31   0.95 
At3g05670.1 68416.m00631 PHD finger family protein contains Pfam...    30   1.3  
At2g43970.2 68415.m05468 La domain-containing protein contains P...    29   2.2  
At2g43970.1 68415.m05467 La domain-containing protein contains P...    29   2.2  
At1g26870.1 68414.m03277 no apical meristem (NAM) family protein...    29   2.2  
At5g23540.1 68418.m02763 26S proteasome regulatory subunit, puta...    29   2.9  
At5g18770.1 68418.m02230 F-box family protein contains F-box dom...    28   5.0  
At1g44900.1 68414.m05144 DNA replication licensing factor, putat...    28   6.7  
At5g61260.1 68418.m07687 chromosome scaffold protein-related con...    27   8.8  
At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam PF05...    27   8.8  

>At1g55030.1 68414.m06285 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 422

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 20/50 (40%), Positives = 30/50 (60%)
 Frame = -3

Query: 174 VELVSDL*ELVITDFLSIVSEVIVCFEILLSRLSISFDRSGFLTFVTLLV 25
           VE VS+L E+ ITD   I+ E +  F   ++RLS++   S F TF T ++
Sbjct: 244 VENVSELIEVNITDVSEIIDEKLRVFLTSVTRLSLALSPSVF-TFPTGII 292


>At3g05670.1 68416.m00631 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 883

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +2

Query: 2   GTRSDYQTTSNVTKVKKPDLSKEIDSLDKRISKQTITSETIERKSVMTSSHKSETSSTVT 181
           GT SD   T+ +   +  D S+ + S +  IS   I+ E +   + + S+H  E  S   
Sbjct: 656 GTSSDGFVTTQIGHGRTIDPSQPVASQETGISLYAISEERLPNNNSLISAHDPELLSPKL 715

Query: 182 KKFGN 196
            +FG+
Sbjct: 716 DEFGS 720


>At2g43970.2 68415.m05468 La domain-containing protein contains Pfam
           profile PF05383: La domain
          Length = 529

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 40  EGQEAGSVEGDRQPGQEDLKANDHLGDYRKEVRNDQLSQIG 162
           E Q+ G V G+++P     K ND     ++E +NDQ+++ G
Sbjct: 139 EYQQRGGVGGEQEPDLVS-KKNDRRDHSKRESKNDQVTETG 178


>At2g43970.1 68415.m05467 La domain-containing protein contains Pfam
           profile PF05383: La domain
          Length = 545

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 40  EGQEAGSVEGDRQPGQEDLKANDHLGDYRKEVRNDQLSQIG 162
           E Q+ G V G+++P     K ND     ++E +NDQ+++ G
Sbjct: 139 EYQQRGGVGGEQEPDLVS-KKNDRRDHSKRESKNDQVTETG 178


>At1g26870.1 68414.m03277 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to GB:AAD22369, NAM stands for No Apicla
           Meristem
          Length = 425

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +1

Query: 106 DHLGDYRKEVRNDQLSQIGDQLHR-HQEIRQ---LLEGK*RKLSWRASCVDSCHRDT 264
           DHLGD+   +R D  +   ++ HR HQ+++Q   LLE     LS   S + +C   T
Sbjct: 368 DHLGDHCDTLRFDDFTSTINENHRHHQDLKQNMTLLESYYSSLSSINSDLPACFSST 424


>At5g23540.1 68418.m02763 26S proteasome regulatory subunit,
           putative similar to 26S proteasome-associated pad1
           homolog [Homo sapiens] GI:1923256, 26S proteasome,
           non-ATPase subunit [Mus musculus] GI:2505940; contains
           Pfam profile PF01398: Mov34/MPN/PAD-1 family
          Length = 308

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = +2

Query: 20  QTTSNVTKVKKPDLSKEIDSLDKRISKQTIT--SETIERKSVMTSSHKSETSSTVTKKFG 193
           QTTSN+  + KP +   I  L++      I      +E K ++    K  T     ++F 
Sbjct: 175 QTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLRRFD 234

Query: 194 NF*KVNDANCRGVL 235
              K N+   + +L
Sbjct: 235 THSKTNEQTVQEML 248


>At5g18770.1 68418.m02230 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 481

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 198 KLPNFLVTVELVSDL*ELVITDFLSIVSEVIV 103
           KL +F  T+ELV+D  E VIT F  ++   +V
Sbjct: 360 KLKHFHFTLELVNDFPEAVITGFSRVLPRCLV 391


>At1g44900.1 68414.m05144 DNA replication licensing factor, putative
           similar to DNA replication licensing factor MCM2 from
           {Xenopus laevis} SP|P55861, SP|P49736 {Homo sapiens};
           contains Pfam profile PF00493: MCM2/3/5 family
          Length = 928

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +1

Query: 34  RDEGQEAGSVEGDRQPGQEDLKANDHLGDYRKEVRNDQLSQIG 162
           RDE  EA   E + +   EDL  +  + DYRK   NDQ    G
Sbjct: 51  RDEPDEA---EDEEEEEGEDLFNDTFMNDYRKMDENDQYESNG 90


>At5g61260.1 68418.m07687 chromosome scaffold protein-related
           contains weak similarity to chromosome scaffold protein
           p85 [Moneuplotes crassus] gi|25990101|gb|AAN75020
          Length = 496

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
 Frame = +2

Query: 8   RSDYQTTSNVTKVKKPDLSKEIDSLDKRISKQTITSETIERKSVM--------TSSHKSE 163
           R+D  +TS      K    K + +++K  + QTI+ E ++ K+V           S K  
Sbjct: 224 RTDKSSTSTGVGSSKVCAPKNLKNVEKAKTTQTISGEDVKEKTVCVVESSVKGVKSEKQP 283

Query: 164 TSSTVTKKFGN 196
           +S   T K GN
Sbjct: 284 SSEKKTMKSGN 294


>At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam
           PF05794: T-complex protein 11
          Length = 1131

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +2

Query: 20  QTTSNVTKVKKPDLSKEIDSLDKRIS--KQTITSETI-ERKSVMTSSHKSETSSTV 178
           + + NVT V +P +   ID L KR++  ++  T  T+  RK    SS ++   ++V
Sbjct: 348 EASKNVTTVSQPSILDNIDHLLKRVATPRRKATPSTLRSRKGKKVSSVRNVAGTSV 403


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,190,513
Number of Sequences: 28952
Number of extensions: 190827
Number of successful extensions: 508
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)