Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060645.seq
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    27   2.5  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    27   2.5  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    26   4.4  
SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p...    26   4.4  

>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 421 VHPWWLI-SYYFELSYFFVFLHLPWSFLWWVIFI*LF 314
           +HPW+LI +++  L   F  +  P+S+    IF+ LF
Sbjct: 92  MHPWFLILNFFISLVVLFGLIMKPYSYPRNYIFLFLF 128


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
 Frame = +2

Query: 344 KRPRQMQKNKKIREF---------KVVRDEPPRMHIKLNESTCPIQKFSVPK 472
           KRP+  +KN + R F         KVVR++  R  I      CP+ +  +PK
Sbjct: 8   KRPQSSEKNHRDRVFVRATRGKVQKVVREQYLRNDIPCQSRACPLCRSKLPK 59


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 68  LIKQYEDQTFIGVFLDDVYYSFYFYFIRDD 157
           +++  E QT+    L+D+Y+SF  + +  D
Sbjct: 872 IVRYCEPQTYTMTRLNDIYHSFLSFLVTQD 901


>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 227

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
 Frame = +2

Query: 269 HAVVGEIKSAMSQIIEQSNEYHPPQKRPRQMQKNKKIREFKVVRDEPPRMHIKLNESTCP 448
           H +V  IK    + +E++ E H   +   Q++K K +RE     D+   M +K       
Sbjct: 13  HKMVSFIKQ---EALEKAKEIHTLSEEEFQVEKAKIVREQCDAIDQTYDMKLKRASMAQK 69

Query: 449 IQKFSV-PKTDVQMLSLYERICLMIKMEVFGNKDGI 553
           I K +V  K+ +++L+  +++   I   V    DGI
Sbjct: 70  IAKSNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGI 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,318
Number of Sequences: 5004
Number of extensions: 56829
Number of successful extensions: 181
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)