Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060645.seq
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850           72   5e-13
10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245...    43   3e-04
11_05_0014 + 18392622-18392834,18393064-18393147,18393709-183937...    39   0.003
09_04_0477 - 17932797-17933974,17934454-17934612,17934693-17934957     29   4.6  
06_01_1152 + 9740279-9740374,9740530-9740940                           29   4.6  
05_05_0042 - 21798255-21798871,21799400-21799777,21799861-218008...    29   4.6  
05_04_0091 + 17839118-17839303,17840876-17840923,17841381-178415...    28   6.0  

>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
          Length = 1173

 Score = 71.7 bits (168), Expect = 5e-13
 Identities = 30/53 (56%), Positives = 36/53 (67%), Gaps = 5/53 (9%)
 Frame = +1

Query: 502 KDLFD-----DKDGGVWKQGWNIEYNENQWSQKNKLKVFIVPHSHNDPGWLKT 645
           KDL+D     D DGG WKQGW + Y  ++W  + KLKVF+ PHSHNDPGW  T
Sbjct: 132 KDLYDRIQFLDVDGGAWKQGWEVSYKSDEWDGE-KLKVFVAPHSHNDPGWRLT 183


>10_01_0232 +
           2456449-2456652,2456814-2456897,2459113-2459201,
           2459245-2459452,2459764-2459883,2460004-2460087,
           2460171-2460242,2460342-2460455,2460852-2460952,
           2461024-2461117,2461265-2461432,2461539-2461616,
           2461908-2461973,2462052-2462108,2462353-2462572,
           2462867-2463003,2465379-2465450,2465530-2465577,
           2465681-2465806,2465982-2466047,2466508-2466620,
           2467348-2467432,2467885-2467980,2468067-2468114,
           2468190-2468258,2468393-2468581
          Length = 935

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 19/40 (47%), Positives = 23/40 (57%)
 Frame = +1

Query: 559 YNENQWSQKNKLKVFIVPHSHNDPGWLKTFXNLLPITNQS 678
           YN +  +   KL V +VPHSH+D GWLKT       TN S
Sbjct: 27  YNTSAGAVAGKLNVHLVPHSHDDVGWLKTIDQYFVGTNNS 66


>11_05_0014 +
           18392622-18392834,18393064-18393147,18393709-18393797,
           18393889-18394063,18394370-18394489,18394591-18394677,
           18394755-18394826,18395166-18395279,18395387-18395487,
           18395576-18395669,18395794-18395961,18396287-18396352,
           18396475-18396531,18396708-18396927,18397015-18397151,
           18397573-18397641,18397722-18397781,18397927-18397998,
           18398171-18398218,18398376-18398495,18398743-18398808,
           18399341-18399453,18399821-18399905,18400246-18400356,
           18400436-18400531,18401075-18401143,18401235-18401453
          Length = 974

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +1

Query: 553 IEYNENQWSQKNKLKVFIVPHSHNDPGWLKTFXNLLPITNQS 678
           I YN +      KL V +VPH+H+D GWLKT       +N S
Sbjct: 28  IPYNTSAGVVGGKLNVHVVPHTHDDVGWLKTVDQYYVGSNNS 69


>09_04_0477 - 17932797-17933974,17934454-17934612,17934693-17934957
          Length = 533

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +2

Query: 284 EIKSAMSQIIEQSNEYHPPQKRPR-QMQKNKKIREFKVVRDEPPRMHIKLNESTCPI 451
           EI     Q +E S    P  K  R ++ + +K+ E     D P  +   L ES+C +
Sbjct: 453 EIAELARQCLEMSGVDRPSMKEVRDKLDRLRKVIEHPWTHDNPEELESLLGESSCVV 509


>06_01_1152 + 9740279-9740374,9740530-9740940
          Length = 168

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
 Frame = +2

Query: 341 QKRPRQMQKNKKI--REFKVVRDEPPRMHIK 427
           Q+R R++   +++  RE++ VRDEP R+H +
Sbjct: 61  QRRRRRVDSRRELQLREYEGVRDEPQRVHAR 91


>05_05_0042 - 21798255-21798871,21799400-21799777,21799861-21800820,
            21800918-21800957,21801471-21801766,21802696-21802774,
            21803013-21803100,21803189-21803273,21803364-21803625,
            21803720-21805027,21806187-21806393,21807288-21807519,
            21808267-21808353,21808427-21808735,21808879-21808957,
            21809788-21809867,21809952-21810029,21810744-21810831,
            21811102-21811241,21811342-21811415,21812043-21812125,
            21812403-21812516,21813975-21814136,21814377-21814641
          Length = 2036

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -1

Query: 548  HPC--FQTPPSLSSNKSFHTGITSAHQFLELRISEWDKLIHS 429
            H C    + P  S+ +     IT    FLEL I EW K I+S
Sbjct: 1672 HGCQIMSSAPESSNTRPRDVIITRIGGFLELEIQEWQKAIYS 1713


>05_04_0091 +
           17839118-17839303,17840876-17840923,17841381-17841526,
           17841616-17841664,17842260-17842316,17842460-17842627,
           17842950-17843011,17843103-17843190,17843277-17843388,
           17843472-17843548,17843622-17843759,17844424-17844588,
           17844667-17844780,17845026-17845122,17845242-17845390
          Length = 551

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 600 NFQFVFLTPLVFIVFDIPSLFPNTSI 523
           ++QF  + PLVF ++DI + + NT +
Sbjct: 117 SYQFEIIQPLVFKIYDIDTRYHNTPV 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,142,247
Number of Sequences: 37544
Number of extensions: 304758
Number of successful extensions: 705
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)