Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060645.seq
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0)             36   0.023
SB_40313| Best HMM Match : Glyco_hydro_38 (HMM E-Value=0)              36   0.023
SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)                      29   2.7  
SB_53623| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_55368| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.033)           28   6.2  
SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)                    28   6.2  
SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0)
          Length = 965

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = +1

Query: 589 KLKVFIVPHSHNDPGWLKT 645
           KL++ IVPH+H+D GWLKT
Sbjct: 39  KLQIHIVPHTHDDVGWLKT 57


>SB_40313| Best HMM Match : Glyco_hydro_38 (HMM E-Value=0)
          Length = 887

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = +1

Query: 589 KLKVFIVPHSHNDPGWLKT 645
           KL++ IVPH+H+D GWLKT
Sbjct: 39  KLQIHIVPHTHDDVGWLKT 57


>SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)
          Length = 1595

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = +2

Query: 305 QIIEQSNEYHPPQKRPRQMQKNKKIREFKVVRDEPPRMHIK--LN--ESTCPIQKFSVPK 472
           +I E S    PP++  +Q      I++FK+  +E  RM I+  LN  +     +KF VP+
Sbjct: 65  KIDEDSKSESPPKRDHQQSPSTMSIKKFKLWSEEQMRMAIEHVLNGMKIRAAAEKFKVPR 124

Query: 473 T 475
           +
Sbjct: 125 S 125


>SB_53623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 223

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = -3

Query: 588 VFLTPLVF---IVFDIPSLFPNTSIFIIKQILSYRDNI 484
           VF+ PLV+   IVF IP ++P+  +F+I   L + D I
Sbjct: 111 VFVIPLVYPDLIVFVIPLVYPDLIVFVIPLSLVHPDLI 148


>SB_55368| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.033)
          Length = 321

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 8/37 (21%)
 Frame = -2

Query: 412 WWLISYYFELSYFFV---FLHLP-----WSFLWWVIF 326
           WW++ +Y +  + F+   F  +P     WS  WW+ F
Sbjct: 173 WWVLCFYLQWPFLFLTLCFSLMPSVFQKWSISWWMYF 209


>SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)
          Length = 739

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 290 KSAMSQIIEQSNEYHPPQKRPRQMQKNKKIREFKVVRDEPPRMHIKLNES 439
           KSA S + EQ      PQKRP+Q    +  RE + +  +      KLN++
Sbjct: 19  KSASSNVKEQE-----PQKRPKQPDSKRFEREIETLNGKIREKEAKLNDA 63


>SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 826

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 538 KQGWNIEYNENQWSQKNKLKVFIVPHSHNDPGWLKTFXN 654
           K+ W I +  +    K KLK F   H++   G ++ F N
Sbjct: 297 KEPWKIVHFRHGMITKEKLKAFCAQHTYEGSGAVELFIN 335


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,387,482
Number of Sequences: 59808
Number of extensions: 388965
Number of successful extensions: 1087
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)