Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060645.seq
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical pr...    69   3e-12
Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical pr...    69   3e-12
U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical pr...    43   2e-04
U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical pr...    32   0.33 
Z81097-7|CAE17864.1|  203|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF016662-6|AAB66056.2|  523|Caenorhabditis elegans Hypothetical ...    29   2.4  
AF106577-13|AAC78186.1|  465|Caenorhabditis elegans Hypothetical...    29   3.1  
AC084153-8|AAK84585.1|  380|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z83102-8|CAB05465.3|  325|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AF025458-1|AAB70977.2|  384|Caenorhabditis elegans Hypothetical ...    28   7.2  
AL023828-28|CAI46623.1|  117|Caenorhabditis elegans Hypothetical...    27   9.5  

>Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical
           protein F58H1.1b protein.
          Length = 1145

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 25/46 (54%), Positives = 34/46 (73%)
 Frame = +1

Query: 511 FDDKDGGVWKQGWNIEYNENQWSQKNKLKVFIVPHSHNDPGWLKTF 648
           F++ DGGVWKQGW IEY+  +     +L+V ++PHSH DPGW+ TF
Sbjct: 154 FENPDGGVWKQGWKIEYDAEKVKSLPRLEVIVIPHSHCDPGWIMTF 199


>Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical
           protein F58H1.1a protein.
          Length = 1143

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 25/46 (54%), Positives = 34/46 (73%)
 Frame = +1

Query: 511 FDDKDGGVWKQGWNIEYNENQWSQKNKLKVFIVPHSHNDPGWLKTF 648
           F++ DGGVWKQGW IEY+  +     +L+V ++PHSH DPGW+ TF
Sbjct: 152 FENPDGGVWKQGWKIEYDAEKVKSLPRLEVIVIPHSHCDPGWIMTF 197


>U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical
           protein F48C1.1 protein.
          Length = 1064

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 17/33 (51%), Positives = 23/33 (69%)
 Frame = +1

Query: 577 SQKNKLKVFIVPHSHNDPGWLKTFXNLLPITNQ 675
           S+  KLKV+++P +H DPGWL+TF      TNQ
Sbjct: 132 SRTEKLKVYVLPFTHVDPGWLETFERYTKSTNQ 164


>U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical
           protein F55D10.1 protein.
          Length = 955

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 547 WNIEYNENQWSQKNKLKVFIVPHSHNDPGWLKT 645
           WN  +  +Q    N +   ++PH+H+D GW+KT
Sbjct: 23  WNTCHKVDQ--DPNVITAHLIPHTHDDLGWIKT 53


>Z81097-7|CAE17864.1|  203|Caenorhabditis elegans Hypothetical
           protein K07A1.14 protein.
          Length = 203

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +2

Query: 410 PRMHIKLNESTCPIQKFSVPKTDVQMLSLYERICLMIKMEVFGNKDGISNTMKTNGV 580
           P++ IK         +F  PKTD+     YE  C  I     G  DG++NT+  N V
Sbjct: 131 PKLPIKWLAPDTVKTRFFTPKTDIYS---YEVTCFEIFSNGQGPWDGVTNTVTKNNV 184


>AF016662-6|AAB66056.2|  523|Caenorhabditis elegans Hypothetical
           protein C33C12.3 protein.
          Length = 523

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 547 WNIEYNENQWSQKNKLKVFIVPHSHNDPGWLKT 645
           W I Y +N       LK+F  P +   PGWLKT
Sbjct: 176 WKIPYIKNAQKYNPNLKLFAAPWA--APGWLKT 206


>AF106577-13|AAC78186.1|  465|Caenorhabditis elegans Hypothetical
           protein F46F5.7 protein.
          Length = 465

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
 Frame = -3

Query: 603 KNFQFVFLTPLVFIVFDI----PSLFPNTSI 523
           + +QF+ +T L+ +VFDI    P LFP++ I
Sbjct: 13  RTYQFILITILLLLVFDIFLNKPELFPSSRI 43


>AC084153-8|AAK84585.1|  380|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.11 protein.
          Length = 380

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 517 DKDGGVWKQGWNIEYNENQWSQKNKLKV 600
           D D  V+ + WN E+ E  WS+++K +V
Sbjct: 294 DMDLAVFSENWNPEFLEFLWSRQSKFRV 321


>Z83102-8|CAB05465.3|  325|Caenorhabditis elegans Hypothetical
           protein C54C8.3 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -2

Query: 238 NFDSKADHLFSSMFIAGLTLGKLKLKSVITYKIKIKAIIHVIQKN 104
           N +  A+     +F+ GLT G+ K+K ++  + K+   I V+  N
Sbjct: 104 NSEIVANGRMKPLFLVGLTPGEYKMKKMVMQEAKLYGDIIVVDMN 148


>AF025458-1|AAB70977.2|  384|Caenorhabditis elegans Hypothetical
           protein C01B12.4 protein.
          Length = 384

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 81  MRIRRLSAFFWMTCIIAFIFILYVMTDLSFNL 176
           M I R + F +   ++ F+F L++M  L FN+
Sbjct: 89  MFIPRAAIFLYAVSLVYFMFTLFIMVTLLFNI 120


>AL023828-28|CAI46623.1|  117|Caenorhabditis elegans Hypothetical
           protein Y17G7B.24 protein.
          Length = 117

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +2

Query: 335 PPQKRPRQMQKNKKIREFKV-VRDEPPRMHIKLNESTCPIQKFSVPKTDVQMLSLYERIC 511
           PP+  P      ++ R   + V+  P   H+    +  PI+K S+P  +V  +SL    C
Sbjct: 7   PPEHSPPCSPLIRRQRPATLYVKHSPRASHV----AQFPIKKISIPTVNVHKMSLTNAEC 62

Query: 512 LMIKMEV 532
           L +  ++
Sbjct: 63  LTVHQQI 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,882,226
Number of Sequences: 27780
Number of extensions: 311051
Number of successful extensions: 967
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)