Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060645.seq
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          29   0.055
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      28   0.096
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           25   0.68 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.6  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   2.1  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   2.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   4.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.3  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 28.7 bits (61), Expect = 0.055
 Identities = 10/40 (25%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 38  YLIN*KKRETLIKQYEDQTF-IGVFLDDVYYSFYFYFIRD 154
           Y++N       +++Y D  + +  F++DV  + Y+Y++R+
Sbjct: 200 YIVNTNYSSKYMREYNDPEYKLDYFMEDVELNAYYYYMRE 239


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 27.9 bits (59), Expect = 0.096
 Identities = 10/40 (25%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 38  YLIN*KKRETLIKQYEDQTF-IGVFLDDVYYSFYFYFIRD 154
           Y++N       +++Y D  + +  F++DV  + Y+Y++R+
Sbjct: 200 YIVNTNYSSKNMREYNDPEYKLDYFMEDVELNAYYYYMRE 239


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 407 PPRMHIKLNESTCPIQKFSVPKTDVQMLSLYERICLMIKMEVFGN 541
           PP + I    +   I+K+ +PK  V+  SLY  I + I+ E  G+
Sbjct: 278 PPAIFIFDLTTDTLIRKYIIPKEQVKEDSLYTNIVVDIRNEDCGS 322



 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 556 EYNENQWSQKNKLKVFI 606
           EY++N W   NKL +++
Sbjct: 492 EYDQNVWVLSNKLAMYL 508


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 541 QGWNIEYNENQWSQKNKLKVFIVPHSH 621
           Q WNIE N + ++    +K F+  + H
Sbjct: 62  QAWNIEANIDSYTNAAAVKEFLSIYKH 88



 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = +2

Query: 80  YEDQTFIGVFLDDVYYSFYFYFIR 151
           Y  +  +  F++D+  + Y++F+R
Sbjct: 214 YNLENKLNYFIEDIGLNTYYFFLR 237


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 541 QGWNIEYNENQWSQKNKLKVFIVPHSH 621
           Q WNIE N + ++    +K F+  + H
Sbjct: 62  QAWNIEANIDSYTNAAAVKEFLSIYKH 88


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 628 GHCVNVVQ*KLSICFSDSIGFHCIRYSILVSKHLHLYH 515
           G C + VQ  ++     S   +C R S L  +H+ L+H
Sbjct: 71  GFCNSQVQPSVASTTGFSKECYCCRESYLKERHITLHH 108


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 628 GHCVNVVQ*KLSICFSDSIGFHCIRYSILVSKHLHLYH 515
           G C + VQ  ++     S   +C R S L  +H+ L+H
Sbjct: 71  GFCNSQVQPSVASTTGFSKECYCCRESYLKERHITLHH 108


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 547 ILVSKHLHLYHQTNPFIQG*H 485
           I +SK+ HL+ + + FIQ  H
Sbjct: 550 ISISKNQHLFVELDQFIQNLH 570


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 376 FFVFLHLPWSFLW 338
           F +F  L WSF+W
Sbjct: 456 FIIFNILYWSFIW 468


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,372
Number of Sequences: 438
Number of extensions: 3954
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)